Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_I09
(522 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0143 + 31962241-31962291,31962385-31962506,31962572-319626... 102 2e-22
06_01_1040 + 8163654-8163704,8163814-8163935,8164011-8164092,816... 101 5e-22
09_04_0439 - 17594131-17594271,17595018-17595100,17595199-175953... 55 3e-08
08_02_1017 - 23616244-23616381,23616471-23616537,23617160-236172... 45 4e-05
03_06_0588 - 34924061-34924644,34924662-34925058 31 0.56
02_04_0418 - 22742220-22743108,22743393-22743397 29 1.7
02_01_0256 + 1680240-1680485,1680950-1681024,1681527-1681776,168... 29 2.3
04_03_0847 - 20254736-20254933,20256127-20256201,20257538-202577... 28 5.2
03_01_0193 + 1541884-1543064,1543153-1544647 27 6.9
01_02_0100 - 11108275-11108535,11110333-11111619 27 9.1
>03_06_0143 +
31962241-31962291,31962385-31962506,31962572-31962671,
31962775-31962822,31963096-31963251,31963330-31963426,
31963525-31963567,31963970-31964037,31964139-31964223,
31964297-31964345,31964566-31964638,31964708-31964768,
31965417-31965483,31965709-31965762,31965854-31965982,
31966485-31966548,31966655-31966728,31966793-31966867,
31966972-31967040,31967759-31967848,31968014-31968121,
31968251-31968298
Length = 576
Score = 102 bits (245), Expect = 2e-22
Identities = 54/123 (43%), Positives = 75/123 (60%)
Frame = +3
Query: 123 ENLLNGANYMDEHFTTAPFERNAPVILALLGVWYHNFYGAETHALLPYDQYLHRYAAYFQ 302
+ L GA +D+HF ++ FE+N P A+LPY Q L ++A + Q
Sbjct: 317 QKFLEGAASIDKHFRSSSFEKNIP-------------------AILPYSQALEKFAPHIQ 357
Query: 303 QGDMESNGKYVTRAGDEVPYSTGPIVWGEPGTNGQHAFYQLIHPGTRLIPCDFIARAQTH 482
Q MESNGK V+ G ++P+ +G I +GEPGTNGQH+FYQLIH G R+IPCDFI ++
Sbjct: 358 QLSMESNGKGVSIDGVQLPFESGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQ 416
Query: 483 NPI 491
P+
Sbjct: 417 QPV 419
>06_01_1040 +
8163654-8163704,8163814-8163935,8164011-8164092,
8164166-8164213,8164516-8164671,8164747-8164843,
8164942-8164984,8165375-8165442,8165533-8165617,
8165698-8165746,8165968-8166040,8166119-8166179,
8167114-8167180,8167400-8167453,8167537-8167665,
8168192-8168255,8168366-8168439,8168523-8168576,
8168696-8168764,8169394-8169483,8169656-8169763,
8169876-8169923
Length = 563
Score = 101 bits (241), Expect = 5e-22
Identities = 54/123 (43%), Positives = 74/123 (60%)
Frame = +3
Query: 123 ENLLNGANYMDEHFTTAPFERNAPVILALLGVWYHNFYGAETHALLPYDQYLHRYAAYFQ 302
+ L GA +D+HF ++ FE+N P A+LPY Q L ++A + Q
Sbjct: 311 QKFLEGAASIDKHFRSSSFEKNIP-------------------AILPYSQALEKFAPHIQ 351
Query: 303 QGDMESNGKYVTRAGDEVPYSTGPIVWGEPGTNGQHAFYQLIHPGTRLIPCDFIARAQTH 482
Q MESNGK V+ G ++ + TG I +GEPGTNGQH+FYQLIH G R+IPCDFI ++
Sbjct: 352 QLSMESNGKGVSIDGVQLSFETGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQ 410
Query: 483 NPI 491
P+
Sbjct: 411 QPV 413
>09_04_0439 -
17594131-17594271,17595018-17595100,17595199-17595355,
17595438-17595576,17595668-17595720,17596150-17596257,
17596345-17596413,17596505-17596570,17596651-17596794,
17597372-17597455,17597539-17597637,17597753-17597875,
17598283-17598831
Length = 604
Score = 55.2 bits (127), Expect = 3e-08
Identities = 37/114 (32%), Positives = 50/114 (43%)
Frame = +3
Query: 123 ENLLNGANYMDEHFTTAPFERNAPVILALLGVWYHNFYGAETHALLPYDQYLHRYAAYFQ 302
+ +L GA MDE + N +LAL W G + +LPY L + Y Q
Sbjct: 338 KEMLVGAALMDEETRNTVVKENPAALLALCWYWASEGIGNKDMVVLPYKDSLLLLSRYLQ 397
Query: 303 QGDMESNGKYVTRAGDEVPYSTGPIVWGEPGTNGQHAFYQLIHPGTRLIPCDFI 464
Q MES GK G+ V + G V+G G+ QHA+ Q + G FI
Sbjct: 398 QLVMESLGKEFDLDGNRV--NQGLTVYGNKGSTDQHAYIQQLREGVHNFFVTFI 449
>08_02_1017 -
23616244-23616381,23616471-23616537,23617160-23617238,
23617330-23617486,23617581-23617719,23617820-23617872,
23618037-23618120,23618291-23618359,23618488-23618553,
23618657-23618800,23619331-23619414,23619498-23619596,
23620097-23620219,23620745-23621290
Length = 615
Score = 44.8 bits (101), Expect = 4e-05
Identities = 35/114 (30%), Positives = 49/114 (42%)
Frame = +3
Query: 123 ENLLNGANYMDEHFTTAPFERNAPVILALLGVWYHNFYGAETHALLPYDQYLHRYAAYFQ 302
+ +L GA MDE + N +LAL W + G++ LL + Y Q
Sbjct: 337 KEMLVGAAQMDEETRNTEIKENPAALLALCWYWASDGIGSKDSLLL--------LSRYLQ 388
Query: 303 QGDMESNGKYVTRAGDEVPYSTGPIVWGEPGTNGQHAFYQLIHPGTRLIPCDFI 464
Q MES GK G+ V + G V+G G+ QHA+ Q + G FI
Sbjct: 389 QLVMESLGKEFDLDGNRV--NQGLTVYGNKGSTDQHAYIQQLREGVHNFFVTFI 440
>03_06_0588 - 34924061-34924644,34924662-34925058
Length = 326
Score = 31.1 bits (67), Expect = 0.56
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +3
Query: 135 NGANYMDEHFTTAPFERNAPVILALLGVWYHN---FYGAETHALLPYDQYLHRYAAYFQQ 305
N AN + +H TAP A V++ L +W+ +G HA+ +++ Y + Q+
Sbjct: 170 NAANRILDHVETAPSGDRALVMMILWRIWHTRNEITHGKHAHAIAASKRFIESYVSSLQE 229
>02_04_0418 - 22742220-22743108,22743393-22743397
Length = 297
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/64 (34%), Positives = 32/64 (50%)
Frame = -2
Query: 494 GYRIVGLRARNEIARNQPSSWMD*LIESVLAVSSRLAPYYGSRRVRDLVSSSGHIFPVTF 315
G+ + G+ A E RN PS+W D IE + V+ L+ + VR+LVS + V
Sbjct: 73 GHSLGGMVAL-EFVRNTPSAWRDKYIEHLFLVAPTLSTGF-VPTVRNLVSGPKDLLHVAN 130
Query: 314 HIAL 303
AL
Sbjct: 131 TTAL 134
>02_01_0256 +
1680240-1680485,1680950-1681024,1681527-1681776,
1681910-1681995,1682669-1682771,1683490-1683602,
1684259-1684351
Length = 321
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 198 ILALLGVWYHNFYGAETHALLPYDQYLHRYAAY 296
++ALLG+ + FYG E + Y++ H YA Y
Sbjct: 220 VVALLGMLVYRFYGDELREMFGYEE--HPYAFY 250
>04_03_0847 -
20254736-20254933,20256127-20256201,20257538-20257717,
20257802-20257869,20258563-20259125,20259198-20259235
Length = 373
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 335 DQSWRRGPVLDGTHSMGRAW 394
++ W RGP +G H GR W
Sbjct: 144 NEGWYRGPGHEGMHCQGRRW 163
>03_01_0193 + 1541884-1543064,1543153-1544647
Length = 891
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = -3
Query: 505 CSPPDIGLWVCARAMKSQGINLVPGWIS**KACWPLVPGSPHTMGPVEYGTSSPALVTYF 326
C+PP+I ++ R+ G + G ++ ++ L GS H GP +G +TYF
Sbjct: 217 CAPPEIS-YISVRSNSLSGA--IAGKLNACRSIDLLDVGSNHFAGPAPFGLLGLVNITYF 273
Query: 325 PLLS 314
+ S
Sbjct: 274 NVSS 277
>01_02_0100 - 11108275-11108535,11110333-11111619
Length = 515
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 188 RSSYFSSPWGVVS 226
R YFSSPWG+++
Sbjct: 473 RKKYFSSPWGIIA 485
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,117,450
Number of Sequences: 37544
Number of extensions: 283913
Number of successful extensions: 672
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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