Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_I07
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976... 77 1e-14
11_06_0297 + 22056644-22058212,22058316-22058423,22058513-220586... 36 0.023
01_06_0916 + 32950575-32950656,32952061-32952272,32952408-329524... 31 0.64
01_06_0917 + 32978306-32978434,32978570-32978645,32979324-329793... 31 0.85
07_01_0116 - 855122-855352,856733-857059,857095-858481,858636-85... 29 2.6
12_01_0084 - 678324-679643 29 3.4
11_01_0083 - 629885-631189 29 3.4
06_03_0896 + 25753377-25754325,25755081-25755691 28 4.5
03_06_0744 + 35910512-35910569,35911145-35911325,35912332-359124... 28 6.0
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744... 27 7.9
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 27 7.9
>05_03_0387 +
13396158-13396271,13396390-13396434,13397004-13397632,
13397727-13397874,13397971-13398147,13398527-13398595,
13398699-13398788,13399000-13399158,13399663-13399753,
13399917-13400008,13400009-13400233,13400394-13400585
Length = 676
Score = 77.0 bits (181), Expect = 1e-14
Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 7/149 (4%)
Frame = +3
Query: 57 SASIDTISSDIQFKNVDRTIDISSQLVKITSKITFENTGKSTIKNFLIAVEDSAKENLAF 236
+AS T +D+ DR +D++S +V++ + + EN+G + FL+A + +NLA
Sbjct: 20 AASTPTARADLVVTRADRKVDLTSHIVRVLTSLKVENSGPEAVSQFLLAFPNVQAKNLAA 79
Query: 237 ITAKDSSNKD------LRLTETTVKGYD-YVKFWRVELKDAVNAGSTTAVTVDTVFTKAL 395
I A + K L + G + F+ L + G T + V TVFT ++
Sbjct: 80 IRAFGTEEKVKGPSMVLPIEVVQPSGVPPELTFFSASLSKPLEKGKTLHLDVLTVFTHSV 139
Query: 396 QPYPTEITQQEDQLVKYIGNLYVYSPYYV 482
QP+P EITQ E QLV Y + SPY V
Sbjct: 140 QPFPEEITQAESQLVVYQDSAQYLSPYPV 168
>11_06_0297 +
22056644-22058212,22058316-22058423,22058513-22058678,
22059000-22059056,22059382-22059479,22059556-22059765,
22060469-22060582,22060819-22060948,22061165-22061298,
22062279-22062359,22062798-22062872,22063210-22063221
Length = 917
Score = 35.9 bits (79), Expect = 0.023
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 14/104 (13%)
Frame = +3
Query: 57 SASIDTISSDIQFKNVDRTIDISSQLVKITSKITFENTGKSTI--------KNFLIAV-- 206
S SID D F NVD T DI + K+ + +T K+ + +NF I
Sbjct: 574 SKSIDAADIDALFPNVDDTPDIDAIFPKVGDAPSAADTSKTVLTSQILCFQENFNIPYPK 633
Query: 207 -EDSA---KENLAFITAKDSSNKDLRLTETTVKGYDYVKFWRVE 326
ED A + ++ KD+++KDL + ++ +++F+R++
Sbjct: 634 GEDMASTISDESIYVLEKDNTDKDLIILHVIIQSLWHLRFFRID 677
>01_06_0916 + 32950575-32950656,32952061-32952272,32952408-32952448,
32952916-32952959,32953259-32953561,32954145-32954302,
32954849-32954965,32955562-32955747,32955872-32956031,
32956079-32956151,32958613-32958889,32959024-32959099,
32960653-32960720,32961270-32961361,32961505-32961578,
32961777-32961820,32962155-32962206,32962585-32962704,
32962777-32962889,32963023-32963110,32963492-32963577,
32964172-32964258,32964491-32964594,32964996-32965098,
32965250-32965345,32965456-32965645,32965777-32965838,
32966014-32966118,32966782-32966983,32967092-32967300,
32968510-32968673,32968799-32968850,32968935-32969021,
32969319-32969441,32969567-32969605,32969606-32969860
Length = 1447
Score = 31.1 bits (67), Expect = 0.64
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -3
Query: 326 FNTPKFHIIVTFHCSL 279
F+TPK HII+ FHC L
Sbjct: 975 FSTPKVHIIIDFHCPL 990
>01_06_0917 +
32978306-32978434,32978570-32978645,32979324-32979391,
32979868-32979959,32980121-32980194,32980372-32980415,
32980752-32980803,32981200-32981319,32981391-32981503,
32981674-32981761,32982144-32982229,32982832-32982918,
32983149-32983252,32983607-32983709,32983861-32983956,
32984067-32984256,32984352-32984413,32984560-32984664,
32985163-32985364,32985473-32985681,32986413-32986537,
32986644-32986695,32986772-32986858,32987125-32987247,
32987375-32987629
Length = 913
Score = 30.7 bits (66), Expect = 0.85
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 326 FNTPKFHIIVTFHCSL 279
F+TPK HI++ FHC L
Sbjct: 467 FSTPKVHIVIDFHCPL 482
>07_01_0116 -
855122-855352,856733-857059,857095-858481,858636-858895
Length = 734
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 183 IKNFLIAVEDSAKENLAFITAKDSSNKDLRLTET-TVKGYDYVKFWRVELKDAVNAGSTT 359
I + L +V + + +A ++ +N +R + ++KGY Y+ +WR++ + A ++
Sbjct: 89 IASQLASVSWNLNKMVADYMHEEHANHPIREYDAGSMKGYRYLVYWRLDKTSKIEAATSY 148
Query: 360 AVTVDT 377
A V T
Sbjct: 149 AARVTT 154
>12_01_0084 - 678324-679643
Length = 439
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/84 (25%), Positives = 38/84 (45%)
Frame = -3
Query: 539 FSKSFDILSVHDYVSFLRYHXXXXXXX*VTDIFHELIFLLSYLCRIRLQSLCENGINRHG 360
FSK FD+ + V R + I +L + L +R++ +NG+ +
Sbjct: 322 FSKGFDLSGMF-IVKEWRNEARFTSDKSASTIISKLEDVAKAL-NLRVRKK-DNGVVKMQ 378
Query: 359 GRRPGVYSILQFNTPKFHIIVTFH 288
GR+ G +LQF+ F + ++H
Sbjct: 379 GRKEGRNGVLQFDIEIFEVTTSYH 402
>11_01_0083 - 629885-631189
Length = 434
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/84 (25%), Positives = 38/84 (45%)
Frame = -3
Query: 539 FSKSFDILSVHDYVSFLRYHXXXXXXX*VTDIFHELIFLLSYLCRIRLQSLCENGINRHG 360
FSK FD+ + V R + I +L + L +R++ +NG+ +
Sbjct: 322 FSKGFDLSGMF-IVKEWRNEARFTSDKSASTIISKLEDVAKAL-NLRVRKK-DNGVVKMQ 378
Query: 359 GRRPGVYSILQFNTPKFHIIVTFH 288
GR+ G +LQF+ F + ++H
Sbjct: 379 GRKEGRNGVLQFDIEIFEVTTSYH 402
>06_03_0896 + 25753377-25754325,25755081-25755691
Length = 519
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 303 YVKFWRVELKDAVNAGS-TTAVTVDTVFTKALQ-PYPTEITQQEDQLVKYIG 452
Y+K W +D N GS TTA T+ + K ++ P + Q E Q V +IG
Sbjct: 335 YLKIWLHGTQDLFNGGSETTATTLQWIMAKLMRNPRVMQKAQDEVQRV-FIG 385
>03_06_0744 +
35910512-35910569,35911145-35911325,35912332-35912419,
35912541-35912726,35913591-35913725,35913803-35913862,
35914609-35914698,35915384-35915515,35916039-35916183,
35916266-35916439,35916629-35916692,35916778-35916847,
35917328-35917445,35918258-35918280,35918398-35918499,
35919831-35920250,35920327-35920563
Length = 760
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 324 ELKDAVNAGSTTAVTVDTVFTKALQPYPTEITQQEDQLVKYIGNLYVY 467
+L++AV A V V TK + P + + +QLV N Y +
Sbjct: 666 DLEEAVGAEDEDTVLTKVVRTKVFEMPPLSVEEAMEQLVNVDHNFYAF 713
>02_05_0958 +
33073302-33073442,33073839-33073913,33074382-33074497,
33076863-33076977,33077100-33077228,33078907-33078954,
33079343-33079469,33079634-33079789,33080031-33080287,
33080431-33080580,33080660-33080714,33080793-33081088,
33081252-33081335,33081869-33081941,33082164-33082291,
33082905-33083090,33083179-33083316,33083394-33083519,
33083705-33083965
Length = 886
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/66 (19%), Positives = 32/66 (48%)
Frame = +3
Query: 24 FFVLYVTIYCNSASIDTISSDIQFKNVDRTIDISSQLVKITSKITFENTGKSTIKNFLIA 203
+FV+ +T C D ++ KNV + D ++++T+++ + +S+ + A
Sbjct: 285 YFVILITTICGRLLKDLHFKHLEHKNVLKQTDKILDIIEVTTRLAEHSKAQSSTA-LMAA 343
Query: 204 VEDSAK 221
+ D +
Sbjct: 344 ISDMVR 349
>01_07_0112 -
41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 560 DLREWFYFSKSFDILSV 510
DLR W Y SK FD+L +
Sbjct: 359 DLRIWVYVSKEFDLLKI 375
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,678,164
Number of Sequences: 37544
Number of extensions: 207973
Number of successful extensions: 524
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -