Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I07
         (568 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y00281-1|CAA68392.1|  607|Homo sapiens protein ( Human mRNA for ...    94   3e-19
CR456742-1|CAG33023.1|  607|Homo sapiens RPN1 protein.                 94   3e-19
BC010839-1|AAH10839.1|  607|Homo sapiens ribophorin I protein.         94   3e-19
AK223595-1|BAD97315.1|  607|Homo sapiens ribophorin I variant pr...    92   1e-18
BC007995-1|AAH07995.1|  568|Homo sapiens Similar to ribophorin I...    88   2e-17
CR533565-1|CAG38596.1|  632|Homo sapiens RACGAP1 protein.              35   0.17 
BC032754-1|AAH32754.1|  632|Homo sapiens RACGAP1 protein protein.      35   0.17 
AB040911-1|BAA96002.1|  570|Homo sapiens KIAA1478 protein protein.     35   0.17 
AB030251-1|BAA90247.1|  632|Homo sapiens GTPase activating prote...    35   0.17 

>Y00281-1|CAA68392.1|  607|Homo sapiens protein ( Human mRNA for
           ribophorin I. ).
          Length = 607

 Score = 94.3 bits (224), Expect = 3e-19
 Identities = 51/134 (38%), Positives = 80/134 (59%), Gaps = 7/134 (5%)
 Frame = +3

Query: 96  KNVDRTIDISSQLVKITSKITFENTG---KSTIKNFLIAVEDSAKENLAF----ITAKDS 254
           ++V RT+D+SS L K+T+++   + G    S   +FL+A+E   +  LA     +  +D 
Sbjct: 34  EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93

Query: 255 SNKDLRLTETTVKGYDYVKFWRVELKDAVNAGSTTAVTVDTVFTKALQPYPTEITQQEDQ 434
              +L + ET +KG    +F+ V+L  A++ G+  +V V+TV+T  L PYPT+ITQ E Q
Sbjct: 94  EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152

Query: 435 LVKYIGNLYVYSPY 476
            V + GN Y YSPY
Sbjct: 153 FVVFEGNHYFYSPY 166


>CR456742-1|CAG33023.1|  607|Homo sapiens RPN1 protein.
          Length = 607

 Score = 94.3 bits (224), Expect = 3e-19
 Identities = 51/134 (38%), Positives = 80/134 (59%), Gaps = 7/134 (5%)
 Frame = +3

Query: 96  KNVDRTIDISSQLVKITSKITFENTG---KSTIKNFLIAVEDSAKENLAF----ITAKDS 254
           ++V RT+D+SS L K+T+++   + G    S   +FL+A+E   +  LA     +  +D 
Sbjct: 34  EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93

Query: 255 SNKDLRLTETTVKGYDYVKFWRVELKDAVNAGSTTAVTVDTVFTKALQPYPTEITQQEDQ 434
              +L + ET +KG    +F+ V+L  A++ G+  +V V+TV+T  L PYPT+ITQ E Q
Sbjct: 94  EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152

Query: 435 LVKYIGNLYVYSPY 476
            V + GN Y YSPY
Sbjct: 153 FVVFEGNHYFYSPY 166


>BC010839-1|AAH10839.1|  607|Homo sapiens ribophorin I protein.
          Length = 607

 Score = 94.3 bits (224), Expect = 3e-19
 Identities = 51/134 (38%), Positives = 80/134 (59%), Gaps = 7/134 (5%)
 Frame = +3

Query: 96  KNVDRTIDISSQLVKITSKITFENTG---KSTIKNFLIAVEDSAKENLAF----ITAKDS 254
           ++V RT+D+SS L K+T+++   + G    S   +FL+A+E   +  LA     +  +D 
Sbjct: 34  EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93

Query: 255 SNKDLRLTETTVKGYDYVKFWRVELKDAVNAGSTTAVTVDTVFTKALQPYPTEITQQEDQ 434
              +L + ET +KG    +F+ V+L  A++ G+  +V V+TV+T  L PYPT+ITQ E Q
Sbjct: 94  EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152

Query: 435 LVKYIGNLYVYSPY 476
            V + GN Y YSPY
Sbjct: 153 FVVFEGNHYFYSPY 166


>AK223595-1|BAD97315.1|  607|Homo sapiens ribophorin I variant
           protein.
          Length = 607

 Score = 92.3 bits (219), Expect = 1e-18
 Identities = 50/134 (37%), Positives = 79/134 (58%), Gaps = 7/134 (5%)
 Frame = +3

Query: 96  KNVDRTIDISSQLVKITSKITFENTG---KSTIKNFLIAVEDSAKENLAF----ITAKDS 254
           ++V RT+D+SS L K+T+++   + G    S   +FL+A+E   +  LA     +  +D 
Sbjct: 34  EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93

Query: 255 SNKDLRLTETTVKGYDYVKFWRVELKDAVNAGSTTAVTVDTVFTKALQPYPTEITQQEDQ 434
              +L + ET +KG    +F+ V+L  A++ G+  +V V+TV+T  L PYPT+ITQ E Q
Sbjct: 94  EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152

Query: 435 LVKYIGNLYVYSPY 476
            V + GN Y Y PY
Sbjct: 153 FVVFEGNHYFYPPY 166


>BC007995-1|AAH07995.1|  568|Homo sapiens Similar to ribophorin I
           protein.
          Length = 568

 Score = 88.2 bits (209), Expect = 2e-17
 Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 7/128 (5%)
 Frame = +3

Query: 114 IDISSQLVKITSKITFENTG---KSTIKNFLIAVEDSAKENLAF----ITAKDSSNKDLR 272
           +D+SS L K+T+++   + G    S   +FL+A+E   +  LA     +  +D    +L 
Sbjct: 1   VDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDEEENNLE 60

Query: 273 LTETTVKGYDYVKFWRVELKDAVNAGSTTAVTVDTVFTKALQPYPTEITQQEDQLVKYIG 452
           + ET +KG    +F+ V+L  A++ G+  +V V+TV+T  L PYPT+ITQ E Q V + G
Sbjct: 61  VRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQFVVFEG 119

Query: 453 NLYVYSPY 476
           N Y YSPY
Sbjct: 120 NHYFYSPY 127


>CR533565-1|CAG38596.1|  632|Homo sapiens RACGAP1 protein.
          Length = 632

 Score = 35.1 bits (77), Expect = 0.17
 Identities = 23/73 (31%), Positives = 37/73 (50%)
 Frame = +3

Query: 72  TISSDIQFKNVDRTIDISSQLVKITSKITFENTGKSTIKNFLIAVEDSAKENLAFITAKD 251
           +I SDI F   D ++D  S LVK T K+      +ST + F+       K+  +  +A D
Sbjct: 151 SILSDISFDKTDESLDWDSSLVK-TFKLKKREKRRSTSRQFVDGPPGPVKKTRSIGSAVD 209

Query: 252 SSNKDLRLTETTV 290
             N+ + + +TTV
Sbjct: 210 QGNESI-VAKTTV 221


>BC032754-1|AAH32754.1|  632|Homo sapiens RACGAP1 protein protein.
          Length = 632

 Score = 35.1 bits (77), Expect = 0.17
 Identities = 23/73 (31%), Positives = 37/73 (50%)
 Frame = +3

Query: 72  TISSDIQFKNVDRTIDISSQLVKITSKITFENTGKSTIKNFLIAVEDSAKENLAFITAKD 251
           +I SDI F   D ++D  S LVK T K+      +ST + F+       K+  +  +A D
Sbjct: 151 SILSDISFDKTDESLDWDSSLVK-TFKLKKREKRRSTSRQFVDGPPGPVKKTRSIGSAVD 209

Query: 252 SSNKDLRLTETTV 290
             N+ + + +TTV
Sbjct: 210 QGNESI-VAKTTV 221


>AB040911-1|BAA96002.1|  570|Homo sapiens KIAA1478 protein protein.
          Length = 570

 Score = 35.1 bits (77), Expect = 0.17
 Identities = 23/73 (31%), Positives = 37/73 (50%)
 Frame = +3

Query: 72  TISSDIQFKNVDRTIDISSQLVKITSKITFENTGKSTIKNFLIAVEDSAKENLAFITAKD 251
           +I SDI F   D ++D  S LVK T K+      +ST + F+       K+  +  +A D
Sbjct: 89  SILSDISFDKTDESLDWDSSLVK-TFKLKKREKRRSTSRQFVDGPPGPVKKTRSIGSAVD 147

Query: 252 SSNKDLRLTETTV 290
             N+ + + +TTV
Sbjct: 148 QGNESI-VAKTTV 159


>AB030251-1|BAA90247.1|  632|Homo sapiens GTPase activating protein
           protein.
          Length = 632

 Score = 35.1 bits (77), Expect = 0.17
 Identities = 23/73 (31%), Positives = 37/73 (50%)
 Frame = +3

Query: 72  TISSDIQFKNVDRTIDISSQLVKITSKITFENTGKSTIKNFLIAVEDSAKENLAFITAKD 251
           +I SDI F   D ++D  S LVK T K+      +ST + F+       K+  +  +A D
Sbjct: 151 SILSDISFDKTDESLDWDSSLVK-TFKLKKREKRRSTSRQFVDGPPGPVKKTRSIGSAVD 209

Query: 252 SSNKDLRLTETTV 290
             N+ + + +TTV
Sbjct: 210 QGNESI-VAKTTV 221


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,961,665
Number of Sequences: 237096
Number of extensions: 1238351
Number of successful extensions: 2470
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2458
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)