Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I06
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    30   0.32 
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.32 
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    28   1.3  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    27   2.3  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   3.0  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   5.2  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    26   5.2  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    25   9.1  

>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 283 NVIVWFRNVYHQFSYKKRTTYDVA-RNNDLKKILEHIPRIRKLPKHLVVLYDF 438
           N + W +  YH+F+Y  +T  +   R  DL+++ E+ P+  K+      + DF
Sbjct: 68  NALRWDKITYHRFAYLAKTRPEAGIRFADLRELWEYEPKHDKIRSWNTYVRDF 120


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 8/99 (8%)
 Frame = +1

Query: 355 RNNDLKKILEHIPRIRKLPKHLVVLYDFDHQCLNDLA-HVVIWS--LVAGIPYLSFYDST 525
           +  D KK+LEH+  IR+L   L+  Y      LN LA +VV++   L+      ++ +  
Sbjct: 395 KKEDCKKLLEHVLPIRQL--FLLNCYSL----LNVLANYVVVFKDRLIFQEINQNWEEHK 448

Query: 526 GELKSN----EEKLFHEIEKNKRGVPGCIKW-SKKPNLN 627
           G++  N      K+F E+++N+  +  CI + +KK NLN
Sbjct: 449 GQIPENFIFSLLKMFGEMQENQGFLNACIYYINKKKNLN 487


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 304  NVYHQFSYKKRTTYDVARNNDLKKILEHIPRIRKL 408
            NV  +   KK +T   + NN L+++L   P +RKL
Sbjct: 900  NVVDRVYLKKSSTRHTSDNNSLEEVLPIFPGVRKL 934


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 144 KKLYRSIRQITRAGQVSRFFHTTNHEL 64
           ++LY  +  +TRA Q SR F+   H +
Sbjct: 51  QELYSGVENLTRADQASRCFNILQHHM 77


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 277 FVNVIVWFRNVYHQFSYKKRTTYDVARNNDLKKILEHIPRIRKLPKHLVV 426
           FVN  +++R +        ++T   A  + L+++ E+IP I K P +L +
Sbjct: 519 FVNSEIYYRFLAQDVVSDHKSTNSSATFSRLEELGENIPAISKQPSYLSI 568


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 398 ILGICSNIFFKSLFLATSYVVRFLY 324
           +LG+ S  FF   +LA +++  FLY
Sbjct: 9   LLGLLSISFFLQWYLANTWIAEFLY 33


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 435 VVQNYEMFW*LSYSRYMF*YLF*IIIPRHIVCCTFFIRKLMINIPK 298
           V  N   F   ++S   F  L   ++ + ++   FFI+ LM+N+ K
Sbjct: 7   VTYNLSFFISFTFSSIFFSSLILFLVYKSVLSKLFFIKYLMLNLTK 52


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 405 LSY-SRYMF*YLF*IIIPRHIVCCTFFIRKLMINIPKPNNYIHKQ 274
           LSY S +++  LF  I+PR  VC    I+ L+ ++ +  + + KQ
Sbjct: 253 LSYKSLFVWNVLFAFILPRLYVCNERSIKHLVASLERSGDKLKKQ 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,355
Number of Sequences: 5004
Number of extensions: 58484
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)