Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I06
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0744 + 19237901-19237912,19238119-19238611,19238860-192389...    29   4.1  
12_01_0561 + 4550119-4550265,4550716-4550791,4551601-4551668,455...    28   5.4  
01_06_1774 + 39803747-39803825,39805338-39805555,39805856-398064...    28   5.4  
01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146           28   5.4  
02_03_0121 + 15468894-15468906,15469008-15469193,15474157-154746...    28   7.1  
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464...    27   9.4  

>04_03_0744 +
           19237901-19237912,19238119-19238611,19238860-19238928,
           19239124-19239140,19239260-19239357,19240019-19240156,
           19240710-19240899,19241175-19241307,19241505-19242442
          Length = 695

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = -3

Query: 360 IPRHI--VCCTFFIRKLMINIPK 298
           +PRH   +CC FF+  L+IN+ K
Sbjct: 579 LPRHCLEICCVFFLAALIINLMK 601


>12_01_0561 +
           4550119-4550265,4550716-4550791,4551601-4551668,
           4551951-4552039,4552136-4552313,4553096-4553229,
           4553307-4553520,4553601-4553785,4553930-4554025,
           4554105-4554231
          Length = 437

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 298 FRNVYHQFSYKKRTTYDVARNNDLKKILEHIPRIRK 405
           F++++++  + K    DV+  NDL + L+ +PR RK
Sbjct: 129 FKDIFNEPRFIKALEGDVSIVNDLPQSLQSVPRARK 164


>01_06_1774 +
           39803747-39803825,39805338-39805555,39805856-39806436,
           39807239-39808136
          Length = 591

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -1

Query: 236 DNMFVFVTVISILKQLYFILFNHFSMLRIL 147
           D  F F+ ++ +L  +YF++ +HF   +++
Sbjct: 533 DYYFYFIALMGVLNLIYFLICSHFYQYKVM 562


>01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146
          Length = 855

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 316 QFSYKKRTTYDVARNNDLKKILEHIPRIRKLPKHLVV 426
           ++S  KR T  V + +DLKK+L     ++K  KH  V
Sbjct: 229 RYSESKRATNKVGKQHDLKKMLPLHSILKKYTKHTSV 265


>02_03_0121 + 15468894-15468906,15469008-15469193,15474157-15474650,
            15475090-15475521,15475597-15475821,15476065-15476346,
            15476432-15476704,15477680-15477805,15481010-15481288,
            15481313-15481588,15481670-15482113,15482200-15482397,
            15482574-15482732,15482832-15483085,15483164-15483316,
            15483395-15483683,15483769-15483807,15483913-15483951
          Length = 1386

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 285  IHKQMYKSKQNLPNQSGQHVCFRYSYKY 202
            IHK+++  KQ + +Q G HVC      Y
Sbjct: 1323 IHKKVFPVKQQIGDQCGFHVCHNMRLLY 1350


>02_05_0844 -
           32144417-32144764,32145588-32145686,32146218-32146410,
           32147049-32147107,32147189-32147263,32147557-32147670,
           32147776-32147895,32148204-32148216,32148421-32148512,
           32149078-32149164,32149254-32149328,32149630-32149680,
           32149852-32149947,32150135-32150221,32150312-32150368,
           32150475-32150600,32150709-32150949,32151028-32151114,
           32151260-32151637,32152847-32153187
          Length = 912

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 307 VYHQFSYKKRTTYDVARNNDLKKILEHIPRIRKLPKHLVVLYD 435
           +Y+ F + K     ++      K+L +I  ++KL  H  ++YD
Sbjct: 504 LYNHFIHSKNVKRLISEGTKQSKVLAYITALKKLCNHPKLIYD 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,925,131
Number of Sequences: 37544
Number of extensions: 310293
Number of successful extensions: 729
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)