Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I06
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11509| Best HMM Match : Ycf9 (HMM E-Value=1.4)                      50   1e-06
SB_55205| Best HMM Match : DUF1270 (HMM E-Value=3.7)                   36   0.036
SB_17131| Best HMM Match : Rep_2 (HMM E-Value=2.9)                     34   0.083
SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 31   1.0  
SB_31433| Best HMM Match : Prenyltransf (HMM E-Value=0.25)             28   7.2  
SB_42894| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_11509| Best HMM Match : Ycf9 (HMM E-Value=1.4)
          Length = 308

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 26/82 (31%), Positives = 43/82 (52%)
 Frame = +1

Query: 322 SYKKRTTYDVARNNDLKKILEHIPRIRKLPKHLVVLYDFDHQCLNDLAHVVIWSLVAGIP 501
           +++  TT       +LK+I  H   ++ LP H+ ++        +D+A +V+W +  GI 
Sbjct: 103 AFRNFTTGIFGARGNLKEIHLHSKSLQTLPSHISLVILEQAISFSDVAKLVVWCMAMGIK 162

Query: 502 YLSFYDSTGELKSNEEKLFHEI 567
           Y+S YD  G LK +  KL  EI
Sbjct: 163 YISVYDHKGILKGDTAKLSSEI 184


>SB_55205| Best HMM Match : DUF1270 (HMM E-Value=3.7)
          Length = 600

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = +1

Query: 421 VVLYDFDHQCLNDLAHVVIWSLVAGIPYLSFYDSTGELKSNEEKLFHEIEKNKRGVPGCI 600
           V LYD     +N+   VV W L  G  ++   +   +LK+N E+L  +IE+    V  C 
Sbjct: 534 VRLYDSLFIVMNEDGIVVAWKLCKGTSFVVIEELLWDLKANLERLNCQIEQIH--VDNCC 591

Query: 601 KWSKKPN 621
           +W +K N
Sbjct: 592 QWGQKLN 598


>SB_17131| Best HMM Match : Rep_2 (HMM E-Value=2.9)
          Length = 547

 Score = 34.3 bits (75), Expect = 0.083
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +1

Query: 421 VVLYDFDHQCLNDLAHVVIWSLVAGIPYLSFYDSTGELKSNEEKLFHEIEKNKRGVPGCI 600
           V LYD     +N+   VV W L  G  ++   +   +LK+N ++L  +IE+    V  C 
Sbjct: 287 VRLYDSLFIVMNEDGIVVAWKLCKGTSFVVIEELLWDLKANLDRLNCQIEQIH--VDNCC 344

Query: 601 KWSKKPN 621
           +W +K N
Sbjct: 345 QWGQKLN 351


>SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/48 (43%), Positives = 25/48 (52%)
 Frame = +3

Query: 408 TKTSRSSVRL*SSMFERLSPCGYLEPSCRYTILELL*FYRRIKKQRRE 551
           T T R+     SS F+RLSP GY  PS R T      F R +  +RRE
Sbjct: 564 TSTERTLSLRTSSEFDRLSPKGYETPSMRPTESN---FTRNLSLKRRE 608


>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1182

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 496  IPYLSFYDSTGELKSNEEKLFHEIEKNKRGVPGCIKWSKKP 618
            I Y +  D   EL+     L  E++K  R V GC+ W  +P
Sbjct: 1142 ITYENLIDELRELRKKMVALKAEVKKKYRLVTGCVPWDTEP 1182


>SB_31433| Best HMM Match : Prenyltransf (HMM E-Value=0.25)
          Length = 214

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 484 LVAGIPYLSFYDSTGELKSNEEKLFHEI 567
           +  GI Y+S YD  G LK +  KL  EI
Sbjct: 1   MAMGIKYISVYDHKGILKGDTAKLSSEI 28


>SB_42894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -2

Query: 460 SRSNIDDQSRTELRDVLVTFLFSVYVLISF 371
           S++N +D+S+ ++ DV   F+F +   +SF
Sbjct: 4   SKANAEDKSKEKIIDVFAFFMFGLVEYVSF 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,810,454
Number of Sequences: 59808
Number of extensions: 401576
Number of successful extensions: 1039
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)