Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_I06
(632 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY113577-1|AAM29582.1| 377|Drosophila melanogaster RH29237p pro... 31 1.3
AE014298-1463|AAF46596.2| 377|Drosophila melanogaster CG32687-P... 31 1.3
AE014297-2102|AAF55245.1| 254|Drosophila melanogaster CG14877-P... 30 2.3
X98882-1|CAA67385.1| 391|Drosophila melanogaster nuclear hormon... 28 9.1
X98881-1|CAA67384.1| 865|Drosophila melanogaster nuclear hormon... 28 9.1
AF238309-1|AAF69495.1| 385|Drosophila melanogaster nuclear rece... 28 9.1
AF238308-1|AAF69494.1| 866|Drosophila melanogaster nuclear rece... 28 9.1
AE014296-3500|AAS65087.1| 338|Drosophila melanogaster CG18023-P... 28 9.1
AE014296-3499|AAN12161.3| 392|Drosophila melanogaster CG18023-P... 28 9.1
AE014296-3498|AAF51692.2| 862|Drosophila melanogaster CG18023-P... 28 9.1
>AY113577-1|AAM29582.1| 377|Drosophila melanogaster RH29237p
protein.
Length = 377
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 349 VARNNDLKKILEHIPRIRKLPKHLVVLYDFDHQCLNDLAHVV 474
+AR +LK +L H R+R LPK +V L + L D VV
Sbjct: 220 IARLKNLKSLLLHKNRLRHLPKDIVALKNLTELSLRDNPLVV 261
>AE014298-1463|AAF46596.2| 377|Drosophila melanogaster CG32687-PA
protein.
Length = 377
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 349 VARNNDLKKILEHIPRIRKLPKHLVVLYDFDHQCLNDLAHVV 474
+AR +LK +L H R+R LPK +V L + L D VV
Sbjct: 220 IARLKNLKSLLLHKNRLRHLPKDIVALKNLTELSLRDNPLVV 261
>AE014297-2102|AAF55245.1| 254|Drosophila melanogaster CG14877-PA
protein.
Length = 254
Score = 30.3 bits (65), Expect = 2.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 327 IRKLMINIPKPNNYIHKQMYKSKQNLPNQSGQHVCF 220
I +L IN+ K +N+ H Y + + +G H CF
Sbjct: 175 ISELTINVMKRHNWSHSIFYYERDGQRSVAGMHTCF 210
>X98882-1|CAA67385.1| 391|Drosophila melanogaster nuclear hormone
receptor protein.
Length = 391
Score = 28.3 bits (60), Expect = 9.1
Identities = 19/80 (23%), Positives = 36/80 (45%)
Frame = +1
Query: 82 MEKAADLPGPCDLSNGSV*LFISIRNIEKWLNKIKYNCFKILITVTKTNMLSRLIRQVLF 261
+E A +PG CD + + I + E WL + + +T+ L+R ++L+
Sbjct: 206 VEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLDDGAYLTRQQLEILY 265
Query: 262 TLVHLFVNVIVWFRNVYHQF 321
FVN ++ F N + +
Sbjct: 266 D--SDFVNALLNFANTLNAY 283
>X98881-1|CAA67384.1| 865|Drosophila melanogaster nuclear hormone
receptor protein.
Length = 865
Score = 28.3 bits (60), Expect = 9.1
Identities = 19/80 (23%), Positives = 36/80 (45%)
Frame = +1
Query: 82 MEKAADLPGPCDLSNGSV*LFISIRNIEKWLNKIKYNCFKILITVTKTNMLSRLIRQVLF 261
+E A +PG CD + + I + E WL + + +T+ L+R ++L+
Sbjct: 680 VEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLDDGAYLTRQQLEILY 739
Query: 262 TLVHLFVNVIVWFRNVYHQF 321
FVN ++ F N + +
Sbjct: 740 D--SDFVNALLNFANTLNAY 757
>AF238309-1|AAF69495.1| 385|Drosophila melanogaster nuclear
receptor E78B protein.
Length = 385
Score = 28.3 bits (60), Expect = 9.1
Identities = 19/80 (23%), Positives = 36/80 (45%)
Frame = +1
Query: 82 MEKAADLPGPCDLSNGSV*LFISIRNIEKWLNKIKYNCFKILITVTKTNMLSRLIRQVLF 261
+E A +PG CD + + I + E WL + + +T+ L+R ++L+
Sbjct: 200 VEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLDDGAYLTRQQLEILY 259
Query: 262 TLVHLFVNVIVWFRNVYHQF 321
FVN ++ F N + +
Sbjct: 260 D--SDFVNALLNFANTLNAY 277
>AF238308-1|AAF69494.1| 866|Drosophila melanogaster nuclear
receptor E78A protein.
Length = 866
Score = 28.3 bits (60), Expect = 9.1
Identities = 19/80 (23%), Positives = 36/80 (45%)
Frame = +1
Query: 82 MEKAADLPGPCDLSNGSV*LFISIRNIEKWLNKIKYNCFKILITVTKTNMLSRLIRQVLF 261
+E A +PG CD + + I + E WL + + +T+ L+R ++L+
Sbjct: 681 VEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLDDGAYLTRQQLEILY 740
Query: 262 TLVHLFVNVIVWFRNVYHQF 321
FVN ++ F N + +
Sbjct: 741 D--SDFVNALLNFANTLNAY 758
>AE014296-3500|AAS65087.1| 338|Drosophila melanogaster CG18023-PC,
isoform C protein.
Length = 338
Score = 28.3 bits (60), Expect = 9.1
Identities = 19/80 (23%), Positives = 36/80 (45%)
Frame = +1
Query: 82 MEKAADLPGPCDLSNGSV*LFISIRNIEKWLNKIKYNCFKILITVTKTNMLSRLIRQVLF 261
+E A +PG CD + + I + E WL + + +T+ L+R ++L+
Sbjct: 153 VEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLDDGAYLTRQQLEILY 212
Query: 262 TLVHLFVNVIVWFRNVYHQF 321
FVN ++ F N + +
Sbjct: 213 D--SDFVNALLNFANTLNAY 230
>AE014296-3499|AAN12161.3| 392|Drosophila melanogaster CG18023-PB,
isoform B protein.
Length = 392
Score = 28.3 bits (60), Expect = 9.1
Identities = 19/80 (23%), Positives = 36/80 (45%)
Frame = +1
Query: 82 MEKAADLPGPCDLSNGSV*LFISIRNIEKWLNKIKYNCFKILITVTKTNMLSRLIRQVLF 261
+E A +PG CD + + I + E WL + + +T+ L+R ++L+
Sbjct: 207 VEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLDDGAYLTRQQLEILY 266
Query: 262 TLVHLFVNVIVWFRNVYHQF 321
FVN ++ F N + +
Sbjct: 267 D--SDFVNALLNFANTLNAY 284
>AE014296-3498|AAF51692.2| 862|Drosophila melanogaster CG18023-PA,
isoform A protein.
Length = 862
Score = 28.3 bits (60), Expect = 9.1
Identities = 19/80 (23%), Positives = 36/80 (45%)
Frame = +1
Query: 82 MEKAADLPGPCDLSNGSV*LFISIRNIEKWLNKIKYNCFKILITVTKTNMLSRLIRQVLF 261
+E A +PG CD + + I + E WL + + +T+ L+R ++L+
Sbjct: 677 VEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLDDGAYLTRQQLEILY 736
Query: 262 TLVHLFVNVIVWFRNVYHQF 321
FVN ++ F N + +
Sbjct: 737 D--SDFVNALLNFANTLNAY 754
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,883,266
Number of Sequences: 53049
Number of extensions: 576969
Number of successful extensions: 1673
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1673
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2641708800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -