Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I06
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82051-10|CAB04822.2|  577|Caenorhabditis elegans Hypothetical p...    32   0.39 
AL021175-11|CAA15973.2|  577|Caenorhabditis elegans Hypothetical...    32   0.39 
Z82053-10|CAB04838.2|  278|Caenorhabditis elegans Hypothetical p...    29   3.7  
AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormo...    28   4.8  
U80836-2|AAV58890.1|  454|Caenorhabditis elegans Abnormal catech...    28   6.4  
U80836-1|AAV58889.1|  393|Caenorhabditis elegans Abnormal catech...    28   6.4  
AF067613-9|AAN73863.2|  326|Caenorhabditis elegans Serpentine re...    28   6.4  

>Z82051-10|CAB04822.2|  577|Caenorhabditis elegans Hypothetical
           protein T23D5.2 protein.
          Length = 577

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +1

Query: 385 HIPRIRKLPKHLVVLYDF---DHQCLNDLAHVVIWSLVAGIPYLSFYDSTG 528
           H+ +I    KHL++L+        CL  LAH  + S  +G  Y S  D  G
Sbjct: 39  HVEKITGAYKHLIILFSLICMSFSCLEVLAHPYLHSFNSGFIYFSLNDYLG 89


>AL021175-11|CAA15973.2|  577|Caenorhabditis elegans Hypothetical
           protein T23D5.2 protein.
          Length = 577

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +1

Query: 385 HIPRIRKLPKHLVVLYDF---DHQCLNDLAHVVIWSLVAGIPYLSFYDSTG 528
           H+ +I    KHL++L+        CL  LAH  + S  +G  Y S  D  G
Sbjct: 39  HVEKITGAYKHLIILFSLICMSFSCLEVLAHPYLHSFNSGFIYFSLNDYLG 89


>Z82053-10|CAB04838.2|  278|Caenorhabditis elegans Hypothetical
           protein T26E3.8 protein.
          Length = 278

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
 Frame = +1

Query: 148 SIRNIEKWLNKIKYNCFKILITVTKTNMLSRLIRQVLFTLVHLFVNVIVWFRN-VYHQFS 324
           S+RN + W  K+K  CF++ I  +  ++   +  ++ +       N I  FR+ + + F 
Sbjct: 46  SMRNFDIWKTKMKEKCFRLYIVASADHIKISMADRMFY-----IGNNIGKFRDKISYIFK 100

Query: 325 YKKRTTYDV----ARNNDLKKILEHIPRIR 402
             K   YD+     R  D+++IL  +  +R
Sbjct: 101 CVKVYRYDIEVNHRREEDVRQILNILRSVR 130


>AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 266 protein.
          Length = 920

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 367 LKKILEHIPRIRKLPKHLVVLYDFDH 444
           L++ILEH+PR+R   ++L++  D  H
Sbjct: 515 LRQILEHVPRLRAGLRNLLITSDRKH 540


>U80836-2|AAV58890.1|  454|Caenorhabditis elegans Abnormal
           catecholamine distributionprotein 2, isoform b protein.
          Length = 454

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 421 RDVLVTFLFSVYVLISFLNHYSSPH 347
           RD L +  F V+   ++L H+ SPH
Sbjct: 249 RDFLASLAFRVFQTTTYLRHHKSPH 273


>U80836-1|AAV58889.1|  393|Caenorhabditis elegans Abnormal
           catecholamine distributionprotein 2, isoform a protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 421 RDVLVTFLFSVYVLISFLNHYSSPH 347
           RD L +  F V+   ++L H+ SPH
Sbjct: 319 RDFLASLAFRVFQTTTYLRHHKSPH 343


>AF067613-9|AAN73863.2|  326|Caenorhabditis elegans Serpentine
           receptor, class z protein20 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = -3

Query: 231 HVCFRYSYKYF----KTIVFYFI*PFFNVTDTN 145
           H+  R  Y YF    KT++F+F+  +   TDTN
Sbjct: 155 HIHKRVHYLYFAFITKTVIFFFVAMYMEWTDTN 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,081,314
Number of Sequences: 27780
Number of extensions: 330493
Number of successful extensions: 1214
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)