Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I06
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76490.1 68414.m08899 3-hydroxy-3-methylglutaryl-CoA reductas...    31   0.84 
At4g34480.1 68417.m04902 glycosyl hydrolase family 17 protein si...    28   4.5  
At1g58410.1 68414.m06645 disease resistance protein (CC-NBS-LRR ...    27   7.8  

>At1g76490.1 68414.m08899 3-hydroxy-3-methylglutaryl-CoA reductase 1
           / HMG-CoA reductase 1 (HMG1) identical to HMG-CoA
           reductase 1 [SP|P14891]
          Length = 592

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
 Frame = +1

Query: 88  KAAD-LPGPCDLSNGSV*-LFISIRN--IEKWLNKIKYNCFKILITVTKTNMLSRLIRQV 255
           KA+D LP P  L+N     LF S+    + +W +KI+YN    ++T+T+   +  LI   
Sbjct: 46  KASDALPLPLYLTNAVFFTLFFSVAYYLLHRWRDKIRYNTPLHVVTITELGAIIALIASF 105

Query: 256 LFTL 267
           ++ L
Sbjct: 106 IYLL 109


>At4g34480.1 68417.m04902 glycosyl hydrolase family 17 protein
           similar to glucan endo-1,3-beta-glucosidase precursor
           SP:P52409 from [Triticum aestivum]
          Length = 356

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = -2

Query: 394 SVYVLISFLNHYSSPHR--MLYVFYTKIDDK---HSETKQLHSQTNVQE 263
           S+Y L+ FL+H+ S H    + V Y ++ D     SET +L   T++Q+
Sbjct: 6   SIYFLLIFLSHFPSSHAEPFIGVNYGQVADNLPPPSETVKLLQSTSIQK 54


>At1g58410.1 68414.m06645 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 899

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +1

Query: 379 LEHIPRIRKLPKHLVVLYDFDHQCLNDLAHVVIWSLV----AGIPYLSF 513
           +  +P+I+ LP HL VL D  + CL +    ++  L+      + YLSF
Sbjct: 757 MPRLPKIQHLPSHLTVL-DLSYCCLEEDPMPILEKLLELKDLSLDYLSF 804


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,672,668
Number of Sequences: 28952
Number of extensions: 283811
Number of successful extensions: 740
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)