Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_I04
(445 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S... 28 0.74
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 28 0.74
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 2.3
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 2.3
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 25 4.0
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 25 5.2
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac... 25 6.9
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 25 6.9
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 24 9.1
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch... 24 9.1
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch... 24 9.1
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 24 9.1
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 24 9.1
>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
S28|Schizosaccharomyces pombe|chr 2|||Manual
Length = 288
Score = 27.9 bits (59), Expect = 0.74
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 74 DKIGASATAAHTDFINRNDYSLDGKLNLFKSPDTSVDFNA-GFKK 205
+KI ASAT DFI N+ +N F S DTS++ N GF++
Sbjct: 119 EKIRASATEETKDFIKLNE------VNEFPSSDTSLESNQDGFER 157
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 27.9 bits (59), Expect = 0.74
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 267 YLESENPKLGSQEDFMKGVSNFLKPALKSTEVSGLLKRF 151
Y ESE+P + S D +S TE S +++RF
Sbjct: 235 YQESEHPIVSSIRDMADSISGVWSRMFSETEASQVMRRF 273
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.2 bits (55), Expect = 2.3
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -2
Query: 228 DFMKGVSNFLKPALKSTEVSGLLKRFSFPSRE*SLRLMKSV*AAVADAPILSLNI 64
DF K N L ++ FSF SRE S R +K + +A+ P L ++I
Sbjct: 576 DFAKVSDNLLFSNFVERWFQSVIGVFSFASRENSNRALKILKSAILYRPHLRMSI 630
>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 115
Score = 26.2 bits (55), Expect = 2.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 197 FKKFDTPFMKSSWEPNFGFSL 259
F+K++T F+KS + N G SL
Sbjct: 38 FEKYETSFLKSLFNGNLGLSL 58
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 4.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 113 FINRNDYSLDGKLNLFKSPDTSVD 184
F N Y G N FK PD S+D
Sbjct: 206 FTRENFYQKFGSPNCFKKPDGSID 229
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 41 TVGGGIDYMFKD-KIGASATAAHTDFIN 121
+VG I Y +D K+ TA+H DF+N
Sbjct: 25 SVGRAIRYCKEDGKVEGCETASHVDFLN 52
>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 24.6 bits (51), Expect = 6.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 101 AHTDFINRNDYSLDGKLNLFKSPDTSVDFNAGFKKFDTPFMKS 229
+H +F + ND+S KLN S + +K+ PF K+
Sbjct: 158 SHDNFSDSNDFSFQKKLNTEDSNTSKTSTLDMYKEKLKPFTKT 200
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 24.6 bits (51), Expect = 6.9
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = -1
Query: 415 ELKLYLLGGHYFIHLH*RNIHLVISFNAKIIQYISKFRYIELV 287
E LY YF+HL N+ +++ + ISK + ++
Sbjct: 423 ERALYFFNNDYFVHLVEENVDIILPIIYPALFEISKSHWNRVI 465
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 24.2 bits (50), Expect = 9.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 104 HTDFINRNDYSLDGKLNLFKSPDT 175
HT +N D+S DG+ L S DT
Sbjct: 44 HTGCVNTLDWSADGEFLLSGSDDT 67
>SPBC365.02c |cox10||protoheme IX
farnesyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 387
Score = 24.2 bits (50), Expect = 9.1
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 261 ESENPKLGSQEDFMK 217
+S+NP LGS+ED +K
Sbjct: 372 DSKNPVLGSEEDTLK 386
>SPAC22F8.12c |shf1||small histone ubiquitination factor
Shf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 24.2 bits (50), Expect = 9.1
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 122 RNDYSLDGKLNLFKSP-DTSVDFNAGFK 202
RNDY DG + ++SP ++VD N+ ++
Sbjct: 5 RNDYHYDGNDHQYRSPLKSNVDQNSFYE 32
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 24.2 bits (50), Expect = 9.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 237 NLTSDSHSLNISNQYLPTNS 296
N +SDS LN N++LP +S
Sbjct: 276 NTSSDSQRLNHQNRHLPDDS 295
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 24.2 bits (50), Expect = 9.1
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 232 GGLHE-GCIELLEAGVEIDRGVRTLEEVQLSVQGVIVTID 116
GG + GC+++++ EID VR + V + V +T +
Sbjct: 535 GGRYSIGCVKVIDPETEIDYAVRVAKSVDCVILCVGLTAE 574
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,487,237
Number of Sequences: 5004
Number of extensions: 27166
Number of successful extensions: 81
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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