Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I04
         (445 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)                  27   9.2  

>SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -2

Query: 270 KYLESENPKLGSQEDFMKGVSNFLKPALKSTEVSGLLKRFSFP 142
           KY++S++  +   +D ++ V++F+K      E   LL+RF FP
Sbjct: 46  KYVQSKHIHVYPCDD-LRWVASFMKDGKTFEEAIALLRRFHFP 87


>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
          Length = 1093

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 68  FKDKIGASATAAHTDFINRNDYSLDGKLNLFKSPDTSVD 184
           + +K  AS    +   I+ + Y LDG LN+ K+   ++D
Sbjct: 838 YTEKFNASLPLTYDMTIHNSTYDLDGNLNIVKTFRDTLD 876


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,590,269
Number of Sequences: 59808
Number of extensions: 188843
Number of successful extensions: 520
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)