Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I03
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   6.8  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    25   9.0  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   9.0  

>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
 Frame = +1

Query: 37  SSYESENVDQNCYT--LITAPENYTISIYFMNVNPNYWNDNYYLDIYDG---NTKSSTKL 201
           S Y+ +N     Y    + +P+ +  S +      +    N  LD  D    +T      
Sbjct: 208 SIYQLDNPGSGNYVWETVISPDKFETSTFAKCERNDIAIINRELDAQDNQLIHTNEDFIA 267

Query: 202 VRIHTEFIYNYPVFSTGRYILIHNHFPD 285
             +H E I      STG+  L+HN+ P+
Sbjct: 268 YAVHREPIIRVIEISTGKSFLLHNNSPN 295


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
 Frame = +1

Query: 106 ISIYFMNVNPNYWNDNY----YLDIYDG 177
           IS+YFM+ +PNY    Y     LD +DG
Sbjct: 43  ISLYFMSWHPNYCTIVYLYSSLLDAFDG 70


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 395 AHSIQIFIEGNLLVSGNSKHFPVHSY 472
           A   Q++ EG+ L++   K +PVH +
Sbjct: 795 AEKFQLYFEGSNLITIPGKTYPVHRF 820


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,474,065
Number of Sequences: 5004
Number of extensions: 51165
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)