Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I03
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0380 - 21633505-21634563,21634626-21634677,21636263-216363...    30   1.3  
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232...    29   4.0  
02_02_0129 + 7055896-7056135,7056404-7056771,7056816-7056928,705...    28   7.0  
10_08_0902 - 21449748-21449993,21450136-21450460,21450658-214509...    27   9.2  

>01_05_0380 -
           21633505-21634563,21634626-21634677,21636263-21636310,
           21636349-21637289,21638737-21638982
          Length = 781

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 343 KGKGCGGKLVNEIGRVTSPLYPNIY 417
           +G G GGK V E G+V  PL+P ++
Sbjct: 2   RGGGGGGKEVEERGKVMGPLFPRLH 26


>06_01_0320 -
           2320317-2320336,2320791-2320902,2321092-2321236,
           2321353-2321459,2321572-2321665,2321752-2321948,
           2322311-2322382,2322504-2322618,2323060-2323176,
           2323253-2323344,2323445-2323621,2323746-2323820,
           2323911-2324051,2324671-2324859,2325298-2325363,
           2325445-2325595,2325718-2325786,2326293-2326441,
           2326526-2326657,2326756-2327081,2327167-2327203,
           2327926-2327980,2328242-2328309,2328464-2328466
          Length = 902

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 148 DNYYLDIYDGNTKSSTKLVRIHTEFIYNYPVFSTGRYIL 264
           D+ ++ +Y+ NT    K+   HT++I    V  T  Y+L
Sbjct: 72  DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVL 110


>02_02_0129 +
           7055896-7056135,7056404-7056771,7056816-7056928,
           7057014-7057118,7057283-7057860,7057889-7058346,
           7058430-7058681,7058762-7058872,7058960-7059020,
           7059122-7059214,7059292-7059477
          Length = 854

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 118 FMNVNPNYWNDNYYLDIYDGNTKSSTKLVRIHTE 219
           + N+ PN WND   L  +    K S KL  I T+
Sbjct: 177 YANITPNQWNDFLTLKNWPEEIKRSQKLRGIRTK 210


>10_08_0902 -
           21449748-21449993,21450136-21450460,21450658-21450905,
           21451091-21451324
          Length = 350

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 397 PLYPNIYRRKSTCEWELETLSGTQLLLRFSTFDMGVNCE 513
           P +P+ +R  S   + LET    + LL F   DMGV+ E
Sbjct: 154 PAHPSSFRN-SMERYSLETAKVARCLLEFLAMDMGVDPE 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,469,281
Number of Sequences: 37544
Number of extensions: 277065
Number of successful extensions: 646
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)