Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_I03
(626 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g10500.1 68416.m01260 no apical meristem (NAM) family protein... 30 1.1
At1g70250.1 68414.m08082 receptor serine/threonine kinase, putat... 29 1.9
At5g66840.1 68418.m08427 SAP domain-containing protein contains ... 29 3.3
At4g03030.1 68417.m00411 kelch repeat-containing F-box family pr... 29 3.3
At1g72500.1 68414.m08383 inter-alpha-trypsin inhibitor heavy cha... 29 3.3
At5g16520.1 68418.m01932 expressed protein 28 5.8
At5g04410.1 68418.m00433 no apical meristem (NAM) family protein... 27 7.7
At1g17630.1 68414.m02181 pentatricopeptide (PPR) repeat-containi... 27 7.7
>At3g10500.1 68416.m01260 no apical meristem (NAM) family protein
similar to to NAC2 (GI:645671) [Arabidopsis thaliana];
contains Pfam PF02365: No apical meristem (NAM) protein
Length = 549
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 31 IQSSYESENVDQNCYTLITAPENYTISIYFMNVNPNYW-NDNYYLDIYD 174
+QSS D +CY NY I F++ N N ND YL+ D
Sbjct: 298 LQSSDNIFGTDTSCYNDFPVESNYLIGEAFLDPNSNLLENDGLYLETND 346
>At1g70250.1 68414.m08082 receptor serine/threonine kinase, putative
similar to to receptor serine/threonine kinase PR5K
gi|1235680|gb|AAC49208
Length = 799
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -1
Query: 584 SAGFSEQNDAFTLPTLSTNCT*FCSQLTPISNVENLKSNCVPES 453
S + N +FT P S FC + + N+ S+ VPE+
Sbjct: 343 SYAYDVDNSSFTCPNFSNFVITFCPSSSTVPEAGNINSSTVPEA 386
>At5g66840.1 68418.m08427 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 551
Score = 28.7 bits (61), Expect = 3.3
Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 4/112 (3%)
Frame = +1
Query: 22 QGRIQSSYESENVDQNCYTLITAPENYTISIYFMNVNPNYWNDNYYLDIYDGNTK----S 189
Q + + + + EN+ Q P N+++ + F N NP+ + N+ + D N S
Sbjct: 284 QVKTRKNEKDENLTQRLRQ--NTPANHSL-VAFPNQNPSQGHKNHPTQLTDMNPANFYTS 340
Query: 190 STKLVRIHTEFIYNYPVFSTGRYILIHNHFPDNSDSPYERLTFDLNYVTTNK 345
R H Y + Y I++H P + PY T+ TN+
Sbjct: 341 RPHAPRSHAPPTYAPRPHAPRSYAPINSHLPRPNIPPYHSYTYSEQQNQTNQ 392
>At4g03030.1 68417.m00411 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 442
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 367 LVNEIGRVTSPL--YPNIYRRKSTCE-WELETLSGTQLLLRFSTFDMGVN 507
L N++GR+ YP+I R KSTC+ W S T + LR S + N
Sbjct: 42 LSNDVGRLILSFVPYPHISRIKSTCKSWYAFLSSKTLISLRHSRDNSNTN 91
>At1g72500.1 68414.m08383 inter-alpha-trypsin inhibitor heavy
chain-related low similarity to Inter-alpha-inhibitor H4
heavy chain [Rattus norvegicus] GI:2292988; contains
Pfam profile PF00092: von Willebrand factor type A
domain
Length = 758
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 457 SGTQLLLRFSTFDMGVNCEQNYVQLVDRVGN 549
+G + R STF +G C ++Q++ R+GN
Sbjct: 453 NGKSISPRISTFGIGSFCNHYFLQMLARIGN 483
>At5g16520.1 68418.m01932 expressed protein
Length = 608
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 247 TGRYILIHNHFPDNSDSPYERLTFDLNYVTTN 342
T YI I HF D DSP + F N+ + N
Sbjct: 247 TNDYIYISWHFVDLPDSPAAAVGFQFNFTSKN 278
>At5g04410.1 68418.m00433 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) protein;
supporting cDNA gi|6456750|gb|AF201456.1|AF201456
Length = 567
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 31 IQSSYESENVDQNCYTLITAPENYTISIYFMNVNPNY-WNDNYYLDIYD 174
++SS + V CY+ I NY FM+ N N ND YL+ D
Sbjct: 306 LESSNNNVFVADTCYSDIPIDHNYLPDEPFMDPNNNLPLNDGLYLETND 354
>At1g17630.1 68414.m02181 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 731
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/60 (21%), Positives = 32/60 (53%)
Frame = +1
Query: 73 YTLITAPENYTISIYFMNVNPNYWNDNYYLDIYDGNTKSSTKLVRIHTEFIYNYPVFSTG 252
YT I++P+ ++S Y+ + N + +Y D G ++ + ++H + + + +F +G
Sbjct: 30 YTSISSPDTVSVSSYYSLTSNNDQSLFHYFDHLLGLCLTAQQCRQVHAQVLLSDFIFRSG 89
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,265,974
Number of Sequences: 28952
Number of extensions: 244828
Number of successful extensions: 624
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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