Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_I02
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 33 0.044
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc... 32 0.077
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 28 0.95
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 27 2.2
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 27 2.9
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 26 3.8
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 3.8
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 26 3.8
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 26 5.1
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo... 26 5.1
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 25 8.9
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 25 8.9
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 32.7 bits (71), Expect = 0.044
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 347 GPHRYVISGDWTTSLRDISFMYWPKRGTLRIQE 445
GPH + + SL D+S +YWP G L ++E
Sbjct: 77 GPHHFTRFRSASLSLEDLSTVYWPNFGPLLLEE 109
>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 31.9 bits (69), Expect = 0.077
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +3
Query: 174 YCYDGYARDENNVCIPVEQCKNPAIKQKRHVKEGTFRCAPANSLESQCTSRLSTFII 344
Y + +EN + I ++ +P I R+++EG R A + ++CT + + +I
Sbjct: 94 YATRNWQTNENGIVIIIQSMSHPLIWSNRNLREGDVRRATVLDVIAKCTEKKLSVVI 150
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 28.3 bits (60), Expect = 0.95
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 359 YVISGDWTTSLRDISF-MYWPKRGTLRIQENMSPRAVLQFSSKIQM 493
YV+SG WT SL++ F Y K L + +N Q +S I M
Sbjct: 269 YVLSGGWTVSLQEFVFNEYCVKSSRLALHDNKDIEYSQQPASAIFM 314
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 375 TGPHRYVISVSCTGPNEEHYASKKTCPPELC 467
TG H + + +S GP+ + TC LC
Sbjct: 750 TGAHNFQLRISVLGPDSDQLPISHTCFNHLC 780
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 48 IECTGKNEFYMCGPACDNVCSELHE 122
IECT ++ +CGP+C N + HE
Sbjct: 156 IECTDEDN--VCGPSCQNQRFQRHE 178
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 486 FKCDAXETPKSGCFCKPGYLREKDNTPCIPXCKCP 590
+KC E P+ GC+ Y K++ P C P
Sbjct: 71 YKCSNEECPRPGCY--RSYSSNKEDHPPCEICNSP 103
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 122 FMQFRADIITGGAAHVKLIFTGTFYWIIKIAL 27
F++F IT + H +IFT ++KIAL
Sbjct: 708 FIEFLFHNITVSSKHTAVIFTSDLLMVLKIAL 739
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 27 KRNFDDPIEC-TGKNEFYMCGPA-CDNVCSELHEQNRTHCPILNIMCNRK 170
KR+ +P+ T ++ +C A C CS+ + Q +TH P N + K
Sbjct: 31 KRDIQNPLSYKTETSDKELCQTAACATSCSDWYPQQQTHMPHQNAFDSAK 80
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 78 MCGPACDNVCSELHEQNRTHCPILNIMCNRKCYCYDGY 191
+CG AC N + ++ HC N N KC + GY
Sbjct: 72 ICG-ACKNSLTVEEYRSTVHCKYCNHPFNPKCKNHAGY 108
>SPCC594.04c |||steroid oxidoreductase superfamily
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 5.1
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = -1
Query: 352 WSRMMNVLSLEVHWLSSEFAGAHLKVPSLTWRFCLMAGFLHCSTGMHTLFSSLA 191
WSR N L+ ++ WLS GA L W G + G L ++
Sbjct: 247 WSRHPNFLAEQLIWLSFYLFGAIASESLLNWTIFAWLGLVGVFQGSTRLTEKMS 300
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +3
Query: 510 PKSG-CFCKPGYLREKDNTPCI 572
P+ G CFCKP + N+ CI
Sbjct: 337 PRKGRCFCKPEEIDLSSNSSCI 358
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3
Query: 542 ISRLTEASRLGGFVSVAFE 486
+S LTEA L GFVSV E
Sbjct: 437 LSELTEAQELLGFVSVIIE 455
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,928
Number of Sequences: 5004
Number of extensions: 61467
Number of successful extensions: 158
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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