Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_I02
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1276 - 27487424-27488050,27488258-27489172 31 0.98
08_02_1159 + 24773328-24773994,24775430-24775558,24776080-247762... 29 3.0
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 29 4.0
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 29 4.0
10_08_0228 - 16008333-16008752 28 5.2
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 28 6.9
06_03_1160 - 28086631-28086688,28086714-28086830,28087057-280871... 28 6.9
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725... 28 6.9
11_01_0788 + 6599962-6602700 27 9.2
09_02_0533 - 10325681-10326211,10326260-10326328,10326758-103268... 27 9.2
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 27 9.2
>12_02_1276 - 27487424-27488050,27488258-27489172
Length = 513
Score = 30.7 bits (66), Expect = 0.98
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 362 VISGDWTTSLRDISFMYWPKRGTLRIQENMSPRAVLQF 475
+++ DWT L S YW K L IQE +S + +L F
Sbjct: 122 IVAYDWTDILFSPSGDYWRKLRRLCIQEILSAKRILSF 159
>08_02_1159 +
24773328-24773994,24775430-24775558,24776080-24776220,
24777393-24777487,24777545-24778606
Length = 697
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 168 KCYCYDGYARDE--NNVCIPVEQCKNPAI 248
+CYC DGY + + C +++CK+P I
Sbjct: 204 RCYCSDGYEGNPYVDGGCRDIDECKSPHI 232
>12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.7 bits (61), Expect = 4.0
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Frame = +3
Query: 207 NVCIPVEQCKNPAIKQKRHVKEGTFRCAPANSLESQCTSRLSTFIILDHIVT*YQVTGPH 386
+ C P++ + A + ++E C A S +C+S + II D I+ +G H
Sbjct: 858 DTCFPIDTLERSASRTTVSIEEHDSSCMDALSSGMECSSAVQP-IINDEILVDLNTSGFH 916
Query: 387 RY--VISVSCTGPNEEHYASKKTCPPELCFSLVARFKCDAXET 509
R + N E A LC S + DA E+
Sbjct: 917 RLSETEDILIKNHNMEMVADNDHLSTNLCLSDI-EMPSDALES 958
>06_01_1087 +
8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +3
Query: 198 DENNVCIPVEQCKNPAIKQKRHVKEGTFR---CAPANSLESQCTSRLSTFIILDH 353
DE NV + ++ + QK + R C P+ S + C S L F+++DH
Sbjct: 681 DEKNVNLSMKSNVSLGGSQKVQIALSPARVIFCFPSESWDLSCPSMLDKFLVIDH 735
>10_08_0228 - 16008333-16008752
Length = 139
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 364 YVTMWSRMMNVLSL-EVHWLSSEFAGAHLKVPSLTWRFCLMAGFLHCSTGMHTLFSSLA 191
Y + S +++ L++ W ++EF G P++ + F L G+LHC + SL+
Sbjct: 73 YAIVTSAIVDSLTIIRFVWGNAEF-GLGKAAPAIPYAFRLCHGYLHCELAIRRTLPSLS 130
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Frame = +3
Query: 495 DAXETPKSGC----FCKP-GYLREKDNTPCIPXCKC 587
D E P+ C +C P GY P +P CKC
Sbjct: 1149 DVAEWPRWDCNYYNYCGPNGYCDNTARAPAVPTCKC 1184
>06_03_1160 -
28086631-28086688,28086714-28086830,28087057-28087183,
28087273-28087456,28087558-28087784,28087907-28088021
Length = 275
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -3
Query: 566 RCVIFLSQISRLTEASRL---GGFVSVAFESCY*TEAQLWGTCFLGCVMFL 423
R V+F S IS +T A+ G +V ESC A +W T +G V L
Sbjct: 68 RRVVFTSSISTMTAATTTAATGRRKAVVDESCLRAAADVWNTKPIGWVYIL 118
>06_03_0852 -
25371461-25371783,25372080-25372159,25372472-25372554,
25372597-25372740,25372836-25372946,25373238-25373354,
25373436-25373562,25374160-25374296
Length = 373
Score = 27.9 bits (59), Expect = 6.9
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +3
Query: 282 RCAPANSLESQCTSRLSTFIILDHIVT*YQVTGPHRYVISVSCT--GPNEEHYASKKTCP 455
RCAP+ S C SR + F + Y+VT Y++S+ GP++ + S + P
Sbjct: 62 RCAPSPHPLSMCQSRAAAF---GYPCEEYKVTTEDGYILSLKRIPHGPHDSN-TSTEMRP 117
Query: 456 PELCF 470
P L F
Sbjct: 118 PVLLF 122
>11_01_0788 + 6599962-6602700
Length = 912
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 157 CATENAIVTMDTPEMRITCAYPSNSVKIQPLNKN 258
C T I+T ++ T AYP++ +K++PL N
Sbjct: 305 CQTSRIIITTRQDDVA-TLAYPTHRLKLKPLEHN 337
>09_02_0533 -
10325681-10326211,10326260-10326328,10326758-10326855,
10326968-10327117,10327848-10327976,10328063-10328999
Length = 637
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Frame = +3
Query: 108 SELHEQNRTHCPILNIMCNR-----KCYCYDGYARDE--NNVCIPVEQCKNP 242
SE ++ C N C+ KC+C DGY + C +++CK+P
Sbjct: 269 SECTYESAPDCLSANSFCHAYDLGYKCHCSDGYQGNPYIRGGCHDIDECKSP 320
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 598 RISGHLXIGMQGVLSFSLKYPGLQKHPDLGVSXASHLNL 482
R ++ IG+QG+ + G+ HPD VS AS L L
Sbjct: 522 RAGDNVAIGLQGIDPSHIMPGGVICHPDYPVSVASCLEL 560
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,818,550
Number of Sequences: 37544
Number of extensions: 419616
Number of successful extensions: 968
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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