Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I02
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    34   0.001
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    34   0.001
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    30   0.016
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.6  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +3

Query: 51  ECTGKNEFYMCGPACDNVCSELHEQNRTHCPILNIMCNRKCYCYDGYARDENNVCIPVEQ 230
           +C     F  C   C   C  +  +     P+   +C   C C  GY R++  VC+P  +
Sbjct: 36  KCPSNEIFSRCDGRCQRFCPNVVPK-----PLCIKICAPGCVCRLGYLRNKKKVCVPRSK 90

Query: 231 C 233
           C
Sbjct: 91  C 91



 Score = 31.5 bits (68), Expect = 0.007
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 519 GCFCKPGYLREKDNTPCIPXCKC 587
           GC C+ GYLR K    C+P  KC
Sbjct: 70  GCVCRLGYLRNKKKV-CVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +3

Query: 51  ECTGKNEFYMCGPACDNVCSELHEQNRTHCPILNIMCNRKCYCYDGYARDENNVCIPVEQ 230
           +C     F  C   C   C  +  +     P+   +C   C C  GY R++  VC+P  +
Sbjct: 36  KCPSNEIFSRCDGRCQRFCPNVVPK-----PLCIKICAPGCVCRLGYLRNKKKVCVPRSK 90

Query: 231 C 233
           C
Sbjct: 91  C 91



 Score = 31.5 bits (68), Expect = 0.007
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 519 GCFCKPGYLREKDNTPCIPXCKC 587
           GC C+ GYLR K    C+P  KC
Sbjct: 70  GCVCRLGYLRNKKKV-CVPRSKC 91


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 30.3 bits (65), Expect = 0.016
 Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
 Frame = +3

Query: 510 PKSGCFCKPGYLREKDNTPC--IPXCKCPEMRSSPDCE 617
           P  GC CKPGY  + +   C   P  K      S  CE
Sbjct: 243 PSGGCHCKPGYQADVEKQECTECPIGKFKHEAGSHSCE 280



 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
 Frame = +3

Query: 522 CFCKPGYLR-EKD--NTPCIPXCKCPE 593
           C C PGY R EKD    PC      P+
Sbjct: 296 CRCDPGYFRAEKDPKKMPCTQPPSAPQ 322


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 535 GLQKHPDLGVSXASHLNLATKLKHSSGGHVFL 440
           G+Q H D        L+L+ K K+S   ++ L
Sbjct: 498 GVQPHQDSATPADQPLDLSAKPKNSQDNNISL 529


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,636
Number of Sequences: 438
Number of extensions: 4557
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)