Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I02
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10560.1 68417.m01729 DC1 domain-containing protein contains ...    31   0.82 
At4g25160.1 68417.m03622 protein kinase family protein contains ...    28   5.8  
At1g27370.2 68414.m03335 squamosa promoter-binding protein-like ...    28   5.8  
At1g27370.1 68414.m03334 squamosa promoter-binding protein-like ...    28   5.8  
At5g62650.1 68418.m07863 expressed protein                             27   7.7  
At4g25520.1 68417.m03680 transcriptional co-regulator family pro...    27   7.7  
At3g15270.1 68416.m01929 squamosa promoter-binding protein-like ...    27   7.7  
At1g07610.1 68414.m00815 metallothionein-like protein 1C (MT-1C)...    27   7.7  
At1g07600.1 68414.m00813 metallothionein-like protein 1A (MT-1A)...    27   7.7  
At1g02065.2 68414.m00127 squamosa promoter-binding protein-like ...    27   7.7  
At1g02065.1 68414.m00128 squamosa promoter-binding protein-like ...    27   7.7  

>At4g10560.1 68417.m01729 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 703

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = +3

Query: 54  CTGKN-EFYMCGPACDNVCSELHEQNRTHCPILNIMCNRKCYCYDGYARDENNVCIPVEQ 230
           C GKN E Y   P  D +   LH ++       +    RKCYC D         C+  + 
Sbjct: 199 CNGKNHEEYEQAP--DEIKHHLHRKHSLQLVFFSEGKERKCYCCDDDLEKVIYCCVSCDY 256

Query: 231 CKNPAIKQK 257
             N A  +K
Sbjct: 257 AMNMACAKK 265


>At4g25160.1 68417.m03622 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 835

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +3

Query: 99  NVCSELHEQNRTH--CPILNIMCNRKCYCYDGYARDENNV 212
           N  S +  Q  TH  CP+L  + N  C   DGY  D + +
Sbjct: 757 NSFSGVSTQPPTHFICPLLKDVMNEPCVAADGYTYDRHAI 796


>At1g27370.2 68414.m03335 squamosa promoter-binding protein-like 10
           (SPL10) identical to squamosa promoter binding
           protein-like 10 [Arabidopsis thaliana] GI:5931669;
           contains Pfam profile PF03110: SBP domain
          Length = 396

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 129 CSVHAIQSRHYHRRGRTCKTH 67
           C +    S+ YHR+ R C+TH
Sbjct: 181 CELDLSSSKDYHRKHRVCETH 201


>At1g27370.1 68414.m03334 squamosa promoter-binding protein-like 10
           (SPL10) identical to squamosa promoter binding
           protein-like 10 [Arabidopsis thaliana] GI:5931669;
           contains Pfam profile PF03110: SBP domain
          Length = 396

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 129 CSVHAIQSRHYHRRGRTCKTH 67
           C +    S+ YHR+ R C+TH
Sbjct: 181 CELDLSSSKDYHRKHRVCETH 201


>At5g62650.1 68418.m07863 expressed protein
          Length = 529

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 403 FHVLAQTRNITHPRKHVPQSCASV**QDSNATLTKPPSLDASV 531
           FH L QTR++   R  V  S AS   ++   ++ +PP +  ++
Sbjct: 260 FHTLIQTRHVQRRRDVVDDSLASEVMEEMGDSMLEPPEVQEAM 302


>At4g25520.1 68417.m03680 transcriptional co-regulator family
           protein contains similarity to GP|18033922|gb|AAL57277
           SEUSS transcriptional co-regulator [Arabidopsis
           thaliana]
          Length = 748

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 368 SGDWTTSLRDISFMYWPKRGTLRI-QENMSPRAVLQFSSKIQMRRXRNPQVWMLL 529
           +G  +  +R+ S+ +  K+  L + QE+M  + +LQ   + Q    RNPQ+  LL
Sbjct: 82  TGQGSVPMRENSYSHVDKKPRLEVKQEDMLQQQILQQLIQRQDPTGRNPQMQALL 136


>At3g15270.1 68416.m01929 squamosa promoter-binding protein-like 5
           (SPL5) identical to squamosa promoter binding
           protein-like 5 [Arabidopsis thaliana] GI:5931629;
           contains Pfam profile PF03110: SBP domain
          Length = 181

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 129 CSVHAIQSRHYHRRGRTCKTH 67
           C+V+  +++ Y+RR R C+ H
Sbjct: 68  CTVNLTEAKQYYRRHRVCEVH 88


>At1g07610.1 68414.m00815 metallothionein-like protein 1C (MT-1C)
           identical to Metallothionein-like protein 1C (MT-1C).
           (SP:Q38804) (Arabidopsis thaliana)
          Length = 45

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +3

Query: 477 VARFKCDAXETPKSG--CFCKPGYLREKDNTPCIPXCKC 587
           +A   C    + K G  C C+  Y +E DN  C   C C
Sbjct: 1   MAGSNCGCGSSCKCGDSCSCEKNYNKECDNCSCGSNCSC 39


>At1g07600.1 68414.m00813 metallothionein-like protein 1A (MT-1A)
           (MT-Q) (MT-2) identical to Metallothionein-like protein
           1A (MT-1A) (MT-Q) (MT-2) SP:P43392 from (Arabidopsis
           thaliana)
          Length = 45

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +3

Query: 477 VARFKCDAXETPKSG--CFCKPGYLREKDNTPCIPXCKC 587
           +A   C    + K G  C C+  Y +E DN  C   C C
Sbjct: 1   MADSNCGCGSSCKCGDSCSCEKNYNKECDNCSCGSNCSC 39


>At1g02065.2 68414.m00127 squamosa promoter-binding protein-like 8
           (SPL8) identical to squamosa promoter binding
           protein-like 8 [Arabidopsis thaliana] GI:5931679;
           contains Pfam profile PF03110: SBP domain
          Length = 246

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 129 CSVHAIQSRHYHRRGRTCKTH 67
           C+     ++HYHRR + C+ H
Sbjct: 193 CNADLSHAKHYHRRHKVCEFH 213


>At1g02065.1 68414.m00128 squamosa promoter-binding protein-like 8
           (SPL8) identical to squamosa promoter binding
           protein-like 8 [Arabidopsis thaliana] GI:5931679;
           contains Pfam profile PF03110: SBP domain
          Length = 333

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 129 CSVHAIQSRHYHRRGRTCKTH 67
           C+     ++HYHRR + C+ H
Sbjct: 193 CNADLSHAKHYHRRHKVCEFH 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,013,970
Number of Sequences: 28952
Number of extensions: 336609
Number of successful extensions: 821
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)