Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H23
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    30   0.19 
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    27   2.4  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    26   3.1  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   5.5  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    25   7.2  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   7.2  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   9.5  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    25   9.5  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 357  SAHYLFYSLIFMNVAPNLLVL-TPIFLFALLHAASYSLTILDTLGQNSMWVARL 515
            SA   +Y  I  ++ PN+  L TP  ++A   A +  LT   +LG + +W++R+
Sbjct: 2014 SASLFWY--ILHSLVPNIYALSTPFIIYATAFALA-GLTTFSSLGDSRLWISRV 2064


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 315 SISREFLARFFLEDSAHYLFYSLIFMNVAPNLL 413
           S S+E LA FF+ D   YLFY+L F+   P ++
Sbjct: 437 SPSKEILA-FFI-DQTWYLFYALFFICNVPRVI 467


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 75  QNPQS--GDTGPPKGIPALKAHVIANKID 155
           +NP+   G  GP KG  A+K H I  +ID
Sbjct: 326 KNPKQRLGADGPEKGYDAIKKHRIYRRID 354


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 170 NPSANSPLHYRISYTYF*QSSVS 238
           +PSAN P H    Y Y+ +SS S
Sbjct: 264 SPSANYPYHEAYEYYYYIRSSFS 286


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 189 GLLALGLPRALHQFC*Q*HELLMLVCPLVGLCLQIEGSDQP 67
           G LAL +  A + F  + H    L+C +V  CLQ E + +P
Sbjct: 290 GSLALAVCNAQYSFPRK-HPYSTLLCEIVEACLQREPNKRP 329


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 87  SGDTGPPKGIPALKAHVIA 143
           SG TG PKG+  L  ++IA
Sbjct: 254 SGSTGKPKGVVLLHRNIIA 272


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 469 VRE*EAACRSANKNIGVKTNKFGATFMKINE*N-R*CALSSKKNRARNSLE 320
           +RE E + ++ N N+G K N       K++E + R   L S+ N+ +N +E
Sbjct: 780 IREAELSKKALNDNLGNKENIISDLKNKLSEESTRLQELQSQLNQDKNQIE 830


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 326 RVSCSIFLGGQRTLPVLLINLHERGTKFIGFDADIF 433
           R   S+F+  ++T   +    +ERG  ++  D +IF
Sbjct: 171 RTESSVFVIDKKTSQCVHYQANERGKHYVSMDPEIF 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,100
Number of Sequences: 5004
Number of extensions: 46612
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)