Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H23
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0488 - 6419731-6420843                                           29   1.8  
01_06_1072 + 34295227-34295316,34295410-34295583,34296268-342963...    29   2.4  
08_02_1340 - 26256768-26256999,26258105-26258774,26259273-262605...    29   3.2  
01_07_0368 + 43105139-43105765                                         28   4.2  
03_05_0511 + 25056018-25059107                                         28   5.5  
10_01_0313 + 3447065-3448204                                           27   9.7  
01_07_0156 - 41544396-41544755,41544854-41544983,41545085-415453...    27   9.7  

>04_01_0488 - 6419731-6420843
          Length = 370

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 440 TSTRGFLLSHHTRYPWTEFDVG 505
           TSTRGFLL+HH   P     VG
Sbjct: 46  TSTRGFLLAHHRHQPSLPLVVG 67


>01_06_1072 +
           34295227-34295316,34295410-34295583,34296268-34296322,
           34296410-34296679,34296881-34297092,34297276-34297396,
           34297674-34297761,34297834-34297912,34298092-34298179,
           34298312-34298352,34298477-34298529,34298623-34298779,
           34298862-34299053
          Length = 539

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 326 RVSCSIFLGGQRTLPVLLINLHER-GTKFIGFDADIFVCTSTRGFLLSHHTRY 481
           R+S S ++    T    + N++ R G    G DADI +    R F++  HT +
Sbjct: 410 RISVSDYVRVTSTECAKIFNIYPRKGAILEGSDADIIILNPERSFVMGAHTHH 462


>08_02_1340 -
           26256768-26256999,26258105-26258774,26259273-26260555,
           26262403-26263499
          Length = 1093

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 189 GLLALGLPRALHQFC*Q*HELLMLVCPLVGLCLQIEG 79
           G+ A G P   H+ C      LM+VCP  G C  + G
Sbjct: 468 GMAARGDPMCEHETCLATGSNLMMVCPECGWCFCVGG 504


>01_07_0368 + 43105139-43105765
          Length = 208

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 23/69 (33%), Positives = 29/69 (42%)
 Frame = -2

Query: 349 KKNRARNSLEIEISLAGIRWCNLSADVAALAKSAL*NADTGLLKIGIRYPIVQRTVSTRI 170
           K  R R   +IE+  A  RW  + ADV  ++   L    TGL+        VQ  VS R 
Sbjct: 126 KARRERADEKIEMERAAGRWLPMDADVRRMSPEELMAFGTGLM-------AVQAAVSARA 178

Query: 169 AQSATSILL 143
            Q     LL
Sbjct: 179 DQMLRDALL 187


>03_05_0511 + 25056018-25059107
          Length = 1029

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 22/81 (27%), Positives = 36/81 (44%)
 Frame = -2

Query: 502 HIEFCPRVSSMVRE*EAACRSANKNIGVKTNKFGATFMKINE*NR*CALSSKKNRARNSL 323
           HI+FC  VSS  R  ++A    +   GV      A      E  R C + +K +R  + L
Sbjct: 85  HIDFCSEVSSAARLSDSALILVDAVEGVHIQTHAALRQAFLERLRPCLVLNKLDRLISEL 144

Query: 322 EIEISLAGIRWCNLSADVAAL 260
            +  + A  R   + +DV ++
Sbjct: 145 HLTPAEAYTRLHRIISDVNSI 165


>10_01_0313 + 3447065-3448204
          Length = 379

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 198 IGYLIPIFNNPVSAFYKALLANAATSALRLHQRIPAREISISREFL 335
           +G+  P   +PV +F     +  A   L  H+ +P REI +  E +
Sbjct: 80  LGFFFPYDFDPVFSFNAGFRSTTAQHHLPAHRFLPEREIGLRWEIV 125


>01_07_0156 -
           41544396-41544755,41544854-41544983,41545085-41545374,
           41545482-41545663,41545784-41546003,41546121-41546139,
           41546394-41546654,41546775-41546863
          Length = 516

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 154 SILLAMT*AFNAGMPFGGPVS 92
           S+L  +T  +N G+ +GGPVS
Sbjct: 43  SVLTGVTATYNTGLRYGGPVS 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,943,496
Number of Sequences: 37544
Number of extensions: 302974
Number of successful extensions: 828
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)