Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H23
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-27|CAA21541.1|  271|Caenorhabditis elegans Hypothetical...   103   6e-23
U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic glut...    29   2.9  
L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate recep...    29   2.9  
Z81037-7|CAB02744.2|  431|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AF022974-5|AAC48036.3|  347|Caenorhabditis elegans Seven tm rece...    27   6.6  

>AL032626-27|CAA21541.1|  271|Caenorhabditis elegans Hypothetical
           protein Y37D8A.17 protein.
          Length = 271

 Score =  103 bits (248), Expect = 6e-23
 Identities = 54/140 (38%), Positives = 82/140 (58%), Gaps = 2/140 (1%)
 Frame = +3

Query: 102 PPKGIPALKAHVIANKIDVALWAIRVLTVLCTIGYLIPIFNN-PV-SAFYKALLANAATS 275
           PP    ++  +V AN ++  L+A RVLTV   + Y+IP     P  SA+YK   A+AAT 
Sbjct: 31  PPPAYSSISQYVSANTMECVLFAARVLTVFFALNYMIPFIGLVPAHSAYYKIFAASAATF 90

Query: 276 ALRLHQRIPAREISISREFLARFFLEDSAHYLFYSLIFMNVAPNLLVLTPIFLFALLHAA 455
           ALRLH RI   + +++ +F+ R  +EDS HYL YS++F+  AP  +   P+ ++A LHA 
Sbjct: 91  ALRLHTRIQG-QFALNAQFIQRLIIEDSFHYLVYSVVFLMAAPVSMAALPVTIYAALHAC 149

Query: 456 SYSLTILDTLGQNSMWVARL 515
           ++   IL   G  S  + +L
Sbjct: 150 TFMTKILRETGHTSSIIPKL 169


>U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic
           glutamate receptor subunitprotein.
          Length = 962

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 80  PSIWRHRPTKGHTSIKSS 133
           PS+WRH  T+ +TS+K+S
Sbjct: 179 PSLWRHLRTRTNTSVKAS 196


>L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 1 protein.
          Length = 962

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 80  PSIWRHRPTKGHTSIKSS 133
           PS+WRH  T+ +TS+K+S
Sbjct: 179 PSLWRHLRTRTNTSVKAS 196


>Z81037-7|CAB02744.2|  431|Caenorhabditis elegans Hypothetical
           protein C17E4.3 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +2

Query: 230 SVSILQSAFG*RGYISAKITPANPC*RNFNLQRVSCSIFLGGQRTLPVLLINLHERG 400
           SV  + S+FG  G +S     A+   R      +S S F  G  T PV+ INL++ G
Sbjct: 353 SVYSVCSSFG-TGVMSCSTPVADNNLRTLTPSPISLSTFKSGCPTEPVVAINLNDSG 408


>AF022974-5|AAC48036.3|  347|Caenorhabditis elegans Seven tm
           receptor protein 208 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +3

Query: 348 LEDSAHYLFYSLIFMNVAPNLLVLTP---IFLFALLHAASYSLTILDTL 485
           +++  + LFYSL+   + P  LV TP   ++ F+ L     SLT + T+
Sbjct: 242 IQNLQNQLFYSLVAQTLIPLFLVHTPAFALYTFSFLRINIGSLTGITTI 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,676,268
Number of Sequences: 27780
Number of extensions: 259896
Number of successful extensions: 736
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)