Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H22
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    25   3.4  
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         24   7.9  

>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 73  SVICSVKEPPPECLQPINEGTCLADIPSYGYNISTKTCV 189
           S+I S+   PPECL  +     + D+   GY   +K+ V
Sbjct: 144 SLIISLSLLPPECLVGLVTFGTMVDVYELGYTECSKSYV 182


>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 288 QIYISSVNVASFLTLKLGVETIGVTSAAGVI 196
           Q+ I++V  AS+LT K+  + I   SAAG +
Sbjct: 8   QLAIAAVRRASYLTEKVFNQLIKEKSAAGAL 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,255,206
Number of Sequences: 5004
Number of extensions: 23281
Number of successful extensions: 47
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)