Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H22
         (354 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0086 - 14729240-14729494,14730107-14730307                       31   0.26 
04_01_0175 - 1972361-1972429,1973185-1973334,1974956-1975105,197...    27   4.2  

>10_08_0086 - 14729240-14729494,14730107-14730307
          Length = 151

 Score = 31.1 bits (67), Expect = 0.26
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 152 GMSAKHVPSLIGCKHSGGGSLTLQI 78
           G+ AK VP+L+ C H GGG + +++
Sbjct: 121 GVGAKGVPTLVACCHRGGGEVGVRL 145


>04_01_0175 -
           1972361-1972429,1973185-1973334,1974956-1975105,
           1975370-1975417,1975717-1975793,1975897-1975999,
           1977103-1977233,1978793-1978970,1980656-1980676,
           1981233-1981290,1981381-1981444,1982261-1982431,
           1982526-1982637,1982779-1983021,1983783-1983964,
           1984785-1984920
          Length = 630

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 64  IVHSVICSVKEPPPECLQPINEGTCLADIPSYGY 165
           I+ S++ + KEP P+   P      +A+ P+YG+
Sbjct: 250 IIFSLLPACKEPDPDTGIPFKVDAIIANPPAYGH 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,860,072
Number of Sequences: 37544
Number of extensions: 141826
Number of successful extensions: 296
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)