Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H22
         (354 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   0.46 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             24   0.46 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   9.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 0.46
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 143 RTSQVTDIISQRKHAYCSITPAAEVTPIVSTPNL 244
           RT+ + D ISQ    +C++    +   + +TP++
Sbjct: 149 RTNPLDDSISQANEGFCAVISMHDGLVLYTTPSI 182


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 24.2 bits (50), Expect = 0.46
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 143 RTSQVTDIISQRKHAYCSITPAAEVTPIVSTPNL 244
           RT+ + D ISQ    +C++    +   + +TP++
Sbjct: 144 RTNPLDDSISQANEGFCAVISMHDGLVLYTTPSI 177


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 1   YLLFFTLTSAMSKCVIL 51
           YLLF TL   +S CV+L
Sbjct: 141 YLLFATLPLRLSFCVVL 157


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 160 GYNISTKTCVLFYYAGCRGNSNRFNTQ 240
           G  +S KT  L+Y A    N N  NT+
Sbjct: 252 GMALSHKTQNLYYSAMSSHNLNYVNTK 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,820
Number of Sequences: 438
Number of extensions: 1510
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)