Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H22
         (354 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20030.1 68415.m02341 zinc finger (C3HC4-type RING finger) fa...    31   0.29 
At2g02610.1 68415.m00200 DC1 domain-containing protein   contain...    27   4.7  
At3g46740.1 68416.m05074 chloroplast outer envelope protein, put...    26   6.3  
At3g26470.1 68416.m03300 expressed protein                             26   8.3  

>At2g20030.1 68415.m02341 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 zinc finger protein
           ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 390

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +1

Query: 43  VILLFIFIVHSVICSVKEPPPECLQPINE--GTCLADIPSYGYNISTKTCVLFYYAGCRG 216
           + +LF FI+     S + PPP  L   ++     LA I      + T T VL  YA C  
Sbjct: 7   ISILFFFIIFLDYVSAQSPPPPNLYATSDLFKPSLAIITGVFSIVFTLTFVLLVYAKCFH 66

Query: 217 NSNRFNTQLECE 252
           N  R  T  + E
Sbjct: 67  NDLRSETDSDGE 78


>At2g02610.1 68415.m00200 DC1 domain-containing protein   contains
           Pfam profile PF03107: DC1 domain
          Length = 627

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 136 CLADIPSYGYNISTKTCVLFYYAGCRGNSNRFNTQ 240
           C+     +GY+ +++TC     A C   +  FN Q
Sbjct: 426 CMRKSNGFGYDCTSRTCYYILDAVCASTAEPFNYQ 460


>At3g46740.1 68416.m05074 chloroplast outer envelope protein,
           putative similar to chloroplastic outer envelope
           membrane protein (OEP75) [Pisum sativum] GI:633607;
           contains Pfam profile PF01103: outer membrane protein,
           OMP85 family
          Length = 818

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 91  KEPPPECLQPINEGTCLADIPSY 159
           K PPP  +   + G C+ D+PSY
Sbjct: 690 KSPPPVLVLHGHYGGCVGDLPSY 712


>At3g26470.1 68416.m03300 expressed protein
          Length = 221

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -2

Query: 146 SAKHVPSLIGCKHSGGGSLTLQITE*TMKINNKITHFDMADVRVKNN 6
           S +HV S  GC + G GS+  Q  +  + ++ ++T  + A+ R  +N
Sbjct: 134 SHEHVTSTKGCDYDGLGSIQYQHIQPNLDMDMRVTILE-AEFRTFSN 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,421,326
Number of Sequences: 28952
Number of extensions: 119636
Number of successful extensions: 277
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)