Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_H21
(513 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce... 33 0.025
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 31 0.13
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar... 29 0.41
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 29 0.54
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 27 1.2
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 27 2.2
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 26 2.9
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 2.9
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 3.8
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 25 5.0
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 6.7
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.8
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 8.8
>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 33.1 bits (72), Expect = 0.025
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +1
Query: 91 RPKPYXXXXXXXXXXKKEQNKNAATRYRQKKKAEVEVLLNEEQALRKHHSELGDKCSDLQ 270
R K K+ +N A+ R+R KKK + + L + L + + L + +L+
Sbjct: 255 RTKATSAIRTAAEEDKRRRNTAASARFRIKKKLKEQQLERTAKELTEKVAILETRVRELE 314
Query: 271 REIRYIKGLMR 303
E ++KGL+R
Sbjct: 315 MENNWLKGLIR 325
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 30.7 bits (66), Expect = 0.13
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +1
Query: 67 DEEWSGPSRPKPYXXXXXXX--XXXKKEQNKNAATRYRQKKKAEVEVLLNEEQALRKHHS 240
D+E G +PK +K QN+ A +R++K+ ++ L + L++ HS
Sbjct: 57 DDEVDGDVKPKKIGRKNSDQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHS 116
Query: 241 ELGDKCSDLQREIRYIKGLMRDL 309
+ L++++R ++ +R L
Sbjct: 117 STTLENDQLRQKVRQLEEELRIL 139
>SPAC21E11.03c |pcr1|mts2|transcription factor
Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 29.1 bits (62), Expect = 0.41
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 142 EQNKNAATRYRQKKKAEVEVLLNEEQALRKHHSELGDKCSDLQREIRYIK 291
E+N+ AA+++RQKKK ++ L A + L S LQ+E +K
Sbjct: 18 ERNRIAASKFRQKKKEWIKELEQTANAAFEQSKRLQLLLSQLQQEAFRLK 67
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 28.7 bits (61), Expect = 0.54
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +1
Query: 136 KKEQNKNAATRYRQKKKAEVEVLLNEEQALRKHHSELGDKCSDLQREIRYIKGLMRDLFK 315
K ++ ++A T+Y KAE+EV ++ KH E+ + LQ + + + DL +
Sbjct: 522 KLQEREHALTKYESSLKAELEVYKQIKEIYGKHSVEVLTEDKHLQVKQTKLTQKLEDLIE 581
Query: 316 A 318
+
Sbjct: 582 S 582
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 27.5 bits (58), Expect = 1.2
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 142 EQNKNAATRYRQKKKAEVEVLLNEEQALRKHHS---ELGDKCSDLQREIRYIKGLMRDLF 312
E+ + AAT+ KKKA+ E + E +++ E K D ++I Y+ L F
Sbjct: 250 EELEEAATKEALKKKADQEKQIGNENYKKRNFPVAIEQYKKAWDTYKDITYLNNLAAAYF 309
Query: 313 KAKGL 327
+A L
Sbjct: 310 EADQL 314
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 161 PPATAKRKRLRSRSFLTRNRP 223
PP+T K +R ++SF TR+ P
Sbjct: 271 PPSTYKHRRSLNKSFATRSEP 291
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 26.2 bits (55), Expect = 2.9
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 142 EQNKNAATRYRQKKKAEVEVLLNEEQALRKHHSELGDKCSDLQREIRYIKGLM 300
E+N+ AA + RQ+KK + L + + + L + S L+ EI +K L+
Sbjct: 480 ERNRQAALKCRQRKKQWLSNLQAKVEFYGNENEILSAQVSALREEIVSLKTLL 532
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 2.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 142 EQNKNAATRYRQKKKAEVEVLLNEEQALRKHHSELGDKCSDLQ 270
E+ + A QK A E++ NE+QAL +S L ++ + Q
Sbjct: 683 EEEREEAIVAGQKLSASFELMSNEKQALELKYSSLKNELINAQ 725
>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 3.8
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +1
Query: 136 KKEQNKNAATRYRQKKKAEVEVLLNEEQALRKHH 237
+K +N + R + +KK ++ ++E R+HH
Sbjct: 50 RKTKNPESDRRRQSRKKKSTQIQASDEMKHRRHH 83
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 5.0
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 139 KEQNKNAATRYRQKKKAEVEVLLNEEQALRKHHSELGDKCSDLQ 270
+ +N+ + + K+KAE L ++ + LR+ SEL K DL+
Sbjct: 283 ERENEVTDKKGKGKQKAEESTLTSDLENLREMLSELEQKTLDLK 326
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 502 IQTIQTYLHLHRLRKYNFIDNNKNITLPPK 413
+Q+I +L L R ++ + N +TLPPK
Sbjct: 733 VQSILEFLVLRRTKETKDRNGNSIVTLPPK 762
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 24.6 bits (51), Expect = 8.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 195 DLSLFLLAVAGGCIFILLLFTR 130
++ FL AV GC FI++ F R
Sbjct: 614 NMIFFLSAVIYGCCFIIIFFMR 635
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 8.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 139 KEQNKNAATRYRQKKKAEVEVLLNEEQALRKHHSE 243
+EQ K AA + ++ +K E E + +EQ RK +
Sbjct: 114 REQEKIAAKKMKELEKLEKERIRLQEQQRRKEERD 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,810,275
Number of Sequences: 5004
Number of extensions: 32264
Number of successful extensions: 90
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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