Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_H21
(513 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0773 - 5760034-5760386,5760889-5760925,5761069-5761225,576... 32 0.31
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181... 31 0.41
06_03_0672 + 23359510-23361253,23389969-23390203,23392078-233922... 31 0.54
01_06_1033 + 33955883-33956374 30 1.3
01_05_0257 + 20030354-20030902 30 1.3
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 2.2
05_05_0337 - 24176184-24176858 29 2.2
12_01_0234 + 1755704-1756120,1756203-1756313,1756923-1757063,175... 29 2.9
06_03_1405 - 29938558-29938676,29939045-29939819 29 2.9
07_03_1490 - 26941322-26941417,26941850-26942377,26944590-269448... 28 3.8
07_03_1488 - 26925166-26925729,26927946-26928184,26929247-269296... 28 3.8
01_05_0145 + 18588201-18588242,18588925-18589044,18589201-185894... 28 3.8
02_05_1029 + 33614888-33615082,33615184-33615243,33615332-336154... 27 6.7
11_01_0124 + 975921-976589,1010229-1011290 27 8.8
05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190... 27 8.8
>02_01_0773 -
5760034-5760386,5760889-5760925,5761069-5761225,
5762584-5762773,5762873-5763154,5763582-5763645
Length = 360
Score = 31.9 bits (69), Expect = 0.31
Identities = 16/54 (29%), Positives = 35/54 (64%)
Frame = +1
Query: 145 QNKNAATRYRQKKKAEVEVLLNEEQALRKHHSELGDKCSDLQREIRYIKGLMRD 306
+N+ +A + R++KKA + L + + L K +SEL ++ S LQ E + ++ ++++
Sbjct: 182 RNRVSAQQARERKKAYLNDLEVKVKDLEKKNSELEERFSTLQNENQMLRQILKN 235
>11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,
1816199-1816309,1816934-1817074,1817153-1817323,
1817421-1817625,1817714-1817886,1817997-1818079,
1818487-1818626,1818806-1818891,1818957-1819142,
1819172-1819365,1820387-1820736,1821153-1821235
Length = 1187
Score = 31.5 bits (68), Expect = 0.41
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +1
Query: 148 NKNAATRYRQKKKAEVEVLLNEEQALRKHHSELGDKC---SDLQREIRYIKGLMRDL 309
N+ A +YRQKKKA L E + LR + +L + + L+ E+ +++ L+ D+
Sbjct: 1066 NREAVRKYRQKKKAHTAHLEEEVKRLRAINQQLVKRLQGQAALEAEVVWLRSLLVDV 1122
>06_03_0672 +
23359510-23361253,23389969-23390203,23392078-23392234,
23392535-23392597
Length = 732
Score = 31.1 bits (67), Expect = 0.54
Identities = 15/54 (27%), Positives = 34/54 (62%)
Frame = +1
Query: 145 QNKNAATRYRQKKKAEVEVLLNEEQALRKHHSELGDKCSDLQREIRYIKGLMRD 306
+N+ +A + R++KKA + L + L + +SEL ++ S LQ E + ++ ++++
Sbjct: 663 RNRVSAQQARERKKAYMSELEARVKDLERSNSELEERLSTLQNENQMLRQVLKN 716
>01_06_1033 + 33955883-33956374
Length = 163
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +1
Query: 148 NKNAATRYRQKKKAEVEVLLNEEQALRKHHSELGDKCS---DLQREIRYIKGLMRDL 309
N+ A +YR+KKKA L E + LR + +L + L+ E+ ++ L+ D+
Sbjct: 21 NREAVRKYREKKKAHAAFLEEEVKKLRTTNQQLLRRLQGHISLEAEVVRLRALLFDI 77
>01_05_0257 + 20030354-20030902
Length = 182
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/64 (25%), Positives = 33/64 (51%)
Frame = +1
Query: 136 KKEQNKNAATRYRQKKKAEVEVLLNEEQALRKHHSELGDKCSDLQREIRYIKGLMRDLFK 315
+KE N+ +A R R +K+ +++ L + ALR + LG + R ++ +L +
Sbjct: 46 RKESNRLSAQRSRARKQQQLDELAGQVAALRARNGALGLAAREAARRCAAVRA-ENELLR 104
Query: 316 AKGL 327
A+ +
Sbjct: 105 ARSV 108
>08_02_0864 +
21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 338 IYLIRPLALKRSRMRPLMYRISRCRSEHLSP 246
++L + ++L + RPL+ RISRC H+ P
Sbjct: 553 LFLEKNISLVLNIKRPLLERISRCTGAHIVP 583
>05_05_0337 - 24176184-24176858
Length = 224
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +1
Query: 148 NKNAATRYRQKKKAEVEVLLNEEQALRKHHSELGDKC---SDLQREIRYIKGLMRDL 309
N+ A +YR+KKKA L E + LR + +L + + L+ E+ ++ ++ D+
Sbjct: 79 NREAVRKYREKKKAHAAFLEEEVKKLRAANQQLLKRLQGHAALEAEVIRLRSILLDV 135
>12_01_0234 +
1755704-1756120,1756203-1756313,1756923-1757063,
1757142-1757312,1757412-1757616,1757738-1757910,
1758021-1758103,1758250-1758389,1758569-1758645,
1758711-1758810,1759978-1760606
Length = 748
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +1
Query: 148 NKNAATRYRQKKKAEVEVLLNEEQALRKHHSELGDKC---SDLQREIRYIKGLMRDL 309
N+ A +YRQKKKA L E + LR + +L + + L+ E+ ++ L+ D+
Sbjct: 607 NREAVRKYRQKKKAHTAHLEEEVKRLRVINQQLVKRLQGQAALEVEVVRLRSLLVDV 663
>06_03_1405 - 29938558-29938676,29939045-29939819
Length = 297
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +1
Query: 148 NKNAATRYRQKKKAEVEVLLNEEQALRKHHSELGDKCSD---LQREIRYIKGLMRDL 309
N+ A +YR+KKKA L E LR + +L K + L+ E+ ++ L+ D+
Sbjct: 103 NRAAVRKYREKKKAHTASLEEEVVHLRALNQQLMKKLQNHATLEAEVSRLRCLLVDI 159
>07_03_1490 -
26941322-26941417,26941850-26942377,26944590-26944828,
26945891-26946318,26946728-26946837
Length = 466
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +1
Query: 163 TRYRQKKKAEVEVLLNEEQALRKHHSELGDKCSDLQREIRYIKGLMRD 306
+R+ +A VE+L++E Q+ + LG SDL +EIR G++ +
Sbjct: 331 SRFNCSAEATVEILISEVQS--SFNLLLGCLTSDLDKEIRLFDGVISE 376
>07_03_1488 -
26925166-26925729,26927946-26928184,26929247-26929674,
26930084-26930193
Length = 446
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +1
Query: 163 TRYRQKKKAEVEVLLNEEQALRKHHSELGDKCSDLQREIRYIKGLMRD 306
+R+ +A VE+L++E Q+ + LG SDL +EIR G++ +
Sbjct: 331 SRFNCSAEATVEILISEVQS--SFNLLLGCLTSDLDKEIRLFDGVISE 376
>01_05_0145 +
18588201-18588242,18588925-18589044,18589201-18589457,
18589980-18590048,18590091-18590115
Length = 170
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 104 IHGPSMTVVLVKRSRIKMQPPATAKRKRLRSRSFLTRNRPCVNITRNL 247
IHG S VV V + + PA +RK + T +R C ++ L
Sbjct: 92 IHGSSSPVVDVPTANVGSDNPAPTERKTIYRHPLNTDSRTCEDVITEL 139
>02_05_1029 +
33614888-33615082,33615184-33615243,33615332-33615403,
33615484-33615659,33615749-33615909,33616122-33616180,
33616269-33616315,33616449-33616589,33616838-33616929,
33616977-33616984
Length = 336
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 175 GGSGWLHFYSAPFYENDGHRRTVNMVLGETVPTIPHRW 62
GGS LHF + GH R + +VL + VP++P+ W
Sbjct: 118 GGSA-LHFAAL-----HGHARCLRLVLADYVPSMPNFW 149
>11_01_0124 + 975921-976589,1010229-1011290
Length = 576
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 151 YSAPFYENDGHRRTVNMVLG-ETVPTIPHRWRRTAVMTAVMN 29
Y + FYE DG R T V+G T+P++ +R R ++ + N
Sbjct: 324 YLSQFYE-DGARYTHGKVVGLRTIPSVVNRIMRATILPRLGN 364
>05_01_0251 +
1901709-1901864,1901968-1901999,1902534-1902664,
1902740-1902821,1902928-1903054,1903369-1903686,
1903785-1903846,1903988-1904074,1904139-1904195,
1906113-1906197,1906916-1907185,1908158-1908254,
1908390-1908436,1908826-1908939,1909024-1909117,
1909360-1909457,1910356-1910455,1911445-1911521,
1911824-1913122
Length = 1110
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -2
Query: 401 LRATQIRGFDTFYRWRRLTLWIYLIRPLALKRSRMRPLMYRISRCRSEHLS 249
L Q+R F T Y+W R TL L + + L + MY +S + +S
Sbjct: 123 LDTPQVREFRTSYKWERPTLEQQLPKVIRLTPIQAAGKMYTLSEISAMPIS 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,349,329
Number of Sequences: 37544
Number of extensions: 243859
Number of successful extensions: 748
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -