Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H18
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    28   0.75 
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    27   1.3  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    25   5.3  
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    25   9.2  

>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 28.3 bits (60), Expect = 0.75
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 494 LVKIQKLWIIVPIKLW*EICQLFLDDFRFLNISIMHNIL 378
           L+K+     +VPIK W    QL L D   L   +++NI+
Sbjct: 2   LLKVSSCEPLVPIKQWIHTSQLDLSDSSSLVADLLYNII 40


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +2

Query: 152 HVTCNQLLTDDISVAATCAKKIYKRHKFDAWYGWKNHCQHGLPDISDC*EKALNFIKQLL 331
           HV  N +      V    A+K Y +H  ++W     + +  LP +SD  E   N+ ++++
Sbjct: 136 HVHKNDINRFGTKVYEELARK-YPQHSLESWRQHYKYMKKRLPPVSDSDES--NYCQRII 192

Query: 332 MKFTSSSCNLKQ 367
           +K  SS  +  Q
Sbjct: 193 VKPYSSQKDYTQ 204


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 447 PQFYRYNYPKLLYFYQTIELTILHSL 524
           P+F+    P ++Y  +T+E+ +L +L
Sbjct: 561 PRFHHQLMPNIVYIDETVEIEVLRAL 586


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 410 NENHQETVGKFPTTILSVQLSKAFVFLPNYRTNNTTF 520
           N  ++ T G   T++ SVQ +    +LPN  T    F
Sbjct: 22  NTRYEPTAGFSGTSVPSVQAANPSAYLPNSATAQMGF 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,021
Number of Sequences: 5004
Number of extensions: 44248
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)