Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_H18
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186... 31 0.43
05_01_0149 + 989698-991797 31 0.57
11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340 29 1.7
03_02_0583 + 9635002-9637299 29 2.3
05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,795... 28 5.3
03_05_0761 - 27515441-27515650,27515967-27516074,27516666-275168... 28 5.3
08_02_0416 + 16902153-16902430,16903089-16903143,16903174-169032... 27 7.1
06_03_0830 + 25159758-25162460 27 7.1
02_01_0654 + 4860897-4860932,4860973-4861161,4861394-4861597,486... 27 9.3
>04_03_0286 +
13915705-13915984,13916478-13917062,13918188-13918661,
13918963-13920208,13920282-13920297
Length = 866
Score = 31.5 bits (68), Expect = 0.43
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +2
Query: 41 FTDKIGKVNKNGSRDYGLFQINDKYWCSTGSTPGKDCHVTC-NQLLTDDIS 190
FT ++N G D+ ++Q+ D+ +G+ P K C+VTC N+ +T+DI+
Sbjct: 124 FTLGYARLNITGC-DFDIYQVLDQ----SGNVPAKLCNVTCPNRGITEDIA 169
>05_01_0149 + 989698-991797
Length = 699
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 99 RSMTNTGAAPGPLLERIAT*LVISY*LTTLAWQL 200
RS TNTG P + R+ T +V + L T+ W+L
Sbjct: 401 RSFTNTGRMPELFVMRLGTIMVTGFILATIFWRL 434
>11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340
Length = 369
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -3
Query: 169 LITSHVAILSRSG---PGAAPVFVIDLEEAVVSRSVLIHFTNFVGKPSAFVLDKADPVT 2
++ +A+L G G A + V+ E V+R+ + HF KP +++ D A PV+
Sbjct: 81 MVVVDLAVLEGHGLEEEGDAELLVLRSGEWTVTRAPVAHFVGRADKPPSWITDMAIPVS 139
>03_02_0583 + 9635002-9637299
Length = 765
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 99 RSMTNTGAAPGPLLERIAT*LVISY*LTTLAWQL 200
R+ TNT P L R+AT +V ++ L T+ W+L
Sbjct: 466 RAFTNTRRTPELFLIRLATVVVTAFILATVFWRL 499
>05_03_0065 -
7953414-7953845,7953963-7954081,7954158-7955990,
7957103-7957559
Length = 946
Score = 27.9 bits (59), Expect = 5.3
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 53 IGKVNKNGSRDYG--LFQINDKYWCSTGSTPGKDCHVTCNQLLTDDISVAATCAKKIYKR 226
+ V +G R G +F++ D+Y G HV Q++TD+ SV T A + +
Sbjct: 447 LDSVECSGDRKDGKYIFELVDRYIEEIGEQ-----HVV--QVVTDNASVNTTAASLLTAK 499
Query: 227 HKFDAWYGWKNHC 265
W G+ HC
Sbjct: 500 RPSIFWNGYAAHC 512
>03_05_0761 -
27515441-27515650,27515967-27516074,27516666-27516839,
27517185-27517469,27517688-27517920,27519422-27520139
Length = 575
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 367 KMFIRILCIILMFKKRKSSRNSWQISYHNFIGTIIQSFCIFTKL*N*QY 513
++FI IL F +R + R SW S N G + + F T++ + +Y
Sbjct: 372 ELFIGILSAGSHFTERMAVRRSWMSSVRNSSGAMARFFVALTRVISAKY 420
>08_02_0416 +
16902153-16902430,16903089-16903143,16903174-16903232,
16903565-16903655
Length = 160
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 269 VDSDFSIRTKRQTCGVCKSSLRT 201
V + ++ T+ QTCG K SLRT
Sbjct: 82 VATPHTVETQHQTCGAVKQSLRT 104
>06_03_0830 + 25159758-25162460
Length = 900
Score = 27.5 bits (58), Expect = 7.1
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +2
Query: 20 VENESGRFTDKIGKVNKNGSRDYGLFQINDKYWCSTGSTPGKDCHVTCNQLLTDDISVAA 199
+ ++SG F+ K + K G D Q ++ C T ST + L+ I+VAA
Sbjct: 482 ITDDSGTFSRKHTRSMKLGGIDLNENQCTEEVDCHTKSTLSNSIN------LSTPIAVAA 535
Query: 200 TCAKKIY-KRHKFDAWYGWK 256
+ ++ R F+ GWK
Sbjct: 536 SRTSSVFPARLHFEGELGWK 555
>02_01_0654 +
4860897-4860932,4860973-4861161,4861394-4861597,
4862503-4862604
Length = 176
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -3
Query: 184 VVSQ*LITSHVAILSRSGPGAAPVFVIDLEEAVVSRSVLIHFTNFVGKPSAFVL 23
+V++ L TS V + PG +PV +D+ +V S I ++F+G S+ L
Sbjct: 111 LVAKALTTSAVPYYQATSPGQSPVLALDV--FLVQASANIILSHFLGLASSLEL 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,495,421
Number of Sequences: 37544
Number of extensions: 258881
Number of successful extensions: 595
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -