Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_H18
(528 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6077| Best HMM Match : EGF (HMM E-Value=0) 29 2.4
SB_31961| Best HMM Match : EGF (HMM E-Value=0) 29 3.1
SB_16801| Best HMM Match : MSSP (HMM E-Value=0.31) 29 3.1
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_49338| Best HMM Match : Antimicrobial18 (HMM E-Value=5.8) 24 5.2
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25) 27 7.2
SB_53214| Best HMM Match : LRR_1 (HMM E-Value=7.4e-06) 27 9.6
SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9) 27 9.6
SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07) 27 9.6
>SB_6077| Best HMM Match : EGF (HMM E-Value=0)
Length = 1165
Score = 29.1 bits (62), Expect = 2.4
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +2
Query: 101 IND-KYWCSTGSTPGKDCHVTCNQLLTDDISVAATCAKKI--YKRHKFDAWYGWKNHCQH 271
+ND K C G T GKDCH+ N+ ++ TC + Y D + G +C+
Sbjct: 424 VNDYKCSCLQGYT-GKDCHIDINECSSNPCQYGGTCLNLLNGYACLCIDGYTGL--NCE- 479
Query: 272 GLPDISDC 295
DI DC
Sbjct: 480 --KDIDDC 485
>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
Length = 2813
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 110 KYWCSTGSTPGKDCHVTCNQLLTDDISVAATCAKKI 217
K CSTG T GK+C V ++ T ATC +I
Sbjct: 1539 KCQCSTGYT-GKNCEVNIDECATKPCLNGATCVDQI 1573
>SB_16801| Best HMM Match : MSSP (HMM E-Value=0.31)
Length = 571
Score = 28.7 bits (61), Expect = 3.1
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -3
Query: 235 KLVAFVNLLCARSCHANVVSQ*LITSHVAILSRSGPGAAPVFVIDLEEAVV-SRSVLIHF 59
KL F N L SC N+ S + T+H I S + FVID + V+ S +I
Sbjct: 170 KLYPFCNKL--DSCCNNLASFVINTTHFVINSNQFVIDSTQFVIDSTQFVIDSTQFVIDS 227
Query: 58 TNFVGKPSAFVLD 20
T FV + FV++
Sbjct: 228 TRFVINSTRFVIN 240
>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1293
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = -2
Query: 452 LW*EICQLFLDDFRFLNISIMHNILINIFVLNYNWNL*ISLEVAL*NLKPFLNSR*YLAV 273
LW + +F+D + + +N + +F +Y N S+ +L KPF N +
Sbjct: 1216 LWEQSQNIFIDYKAMAKLRVQYNAVEELFYFDYTQNPAFSIVKSLAKHKPFPNPLLSSLL 1275
Query: 272 HVDSDFSIRTKR 237
HV +KR
Sbjct: 1276 HVVEYIDQASKR 1287
>SB_49338| Best HMM Match : Antimicrobial18 (HMM E-Value=5.8)
Length = 265
Score = 24.2 bits (50), Expect(2) = 5.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 143 KDCHVTCNQLLTDDISVAATCAKKIYKRHKFD 238
K C V N LL+ + V+ T ++KR+ F+
Sbjct: 231 KRCSVPENTLLSKQVDVSTTWKVLLHKRNLFE 262
Score = 22.2 bits (45), Expect(2) = 5.2
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 59 KVNKNGSRDYGLFQINDKYWCSTGSTPGKDCHV 157
+V KN + D I + + G+ P KDC +
Sbjct: 188 EVEKNSASDSNKASIPRQKQITFGAKPAKDCQL 220
>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2317
Score = 24.6 bits (51), Expect(2) = 7.2
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 245 YGWKNHCQHGLPDIS 289
YGW N C HG +S
Sbjct: 2165 YGWNNCCTHGATPMS 2179
Score = 21.0 bits (42), Expect(2) = 7.2
Identities = 9/36 (25%), Positives = 13/36 (36%)
Frame = +2
Query: 164 NQLLTDDISVAATCAKKIYKRHKFDAWYGWKNHCQH 271
N T + C K + + + GW N C H
Sbjct: 2118 NNCCTHEYGWNNCCNNKYRWNNCYTHYNGWSNCCSH 2153
>SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)
Length = 2146
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 370 MFIRILCIILMFKKRKSSRNSWQISYHNFIGTIIQSFCI 486
M I+C++L KK +R ++ + N++ I+ S C+
Sbjct: 1828 MLFVIICLVLEIKKAVGTRCTYFRKFGNWLEIILLSLCV 1866
>SB_53214| Best HMM Match : LRR_1 (HMM E-Value=7.4e-06)
Length = 298
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +2
Query: 242 WYGWKNHCQHGLPDISDC*EKALNFIKQLLMKFTSSSCNLKQKXXXXXXXXXXXXKNEN 418
W KN + D S+ E A+N K LL KF+ SS L ++ +NEN
Sbjct: 230 WIREKNLMDNDWFDWSEATESAINKRKFLLSKFSGSSRFLSKQMPQLGINHEAPVRNEN 288
>SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9)
Length = 870
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/38 (26%), Positives = 16/38 (42%)
Frame = +2
Query: 158 TCNQLLTDDISVAATCAKKIYKRHKFDAWYGWKNHCQH 271
TC+ L +S + C+ + + W WKN H
Sbjct: 351 TCDSLAVRKLSDSKACSSAVNSLRIVNDWKAWKNRDDH 388
>SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07)
Length = 546
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +2
Query: 146 DCHVTCNQLLTDDISVAATCAKKIYKRHKF 235
D +V+ N+ TD++++A+TCA+ + KF
Sbjct: 108 DENVSNNEPHTDNVNIASTCAEPLADASKF 137
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,188,459
Number of Sequences: 59808
Number of extensions: 318658
Number of successful extensions: 808
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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