Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H17
         (348 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   1.2  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    22   2.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   2.1  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    20   8.3  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    20   8.3  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 329 ELVRIDNQPGVAERTQLLQHRP 264
           EL+ +D++PG+ +R +   H P
Sbjct: 340 ELLPLDSEPGMLKRKRQKYHDP 361


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 341 GATAELVRIDNQPGVAERTQLLQHRPEP*VDVCPDTG 231
           G   +++R   Q  +AER + L++ P   +DVC + G
Sbjct: 43  GNLFDIMRTPEQLFLAERERGLKYYPIYKLDVCGNGG 79


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 292 SATPGWLSIRTSSAVAPPP 348
           +ATP   S  TS A APPP
Sbjct: 18  AATPISSSGMTSPAAAPPP 36


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
          protein.
          Length = 287

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 18 LYDHQHVVAEPLN 56
          +Y HQ  VA P N
Sbjct: 10 MYRHQQAVAAPAN 22


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
          protein.
          Length = 249

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 18 LYDHQHVVAEPLN 56
          +Y HQ  VA P N
Sbjct: 10 MYRHQQAVAAPAN 22


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,088
Number of Sequences: 336
Number of extensions: 1744
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6876025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)