Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H17
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    74   7e-15
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    31   0.051
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   0.63 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   0.63 
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   1.9  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   2.5  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    25   2.5  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       25   3.4  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   4.4  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    24   5.9  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    24   7.8  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    24   7.8  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    24   7.8  

>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 73.7 bits (173), Expect = 7e-15
 Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
 Frame = +3

Query: 3   SFNCILYDHQHVVAEPLNVSCE---------RSSPCSVWGPTCDGLDCVVAATRLP-AMS 152
           S NCIL+DHQH VA  L                  C +WGPTCD LD +     LP  ++
Sbjct: 335 SLNCILFDHQHPVARVLKCGSRFVYNDLVGTGQHRCFIWGPTCDSLDVIANDAHLPYELN 394

Query: 153 LAEWVVWRDMGAYTMPVASTFNGFPVPGVRAYVDS 257
           + +W+ + D GAYT+  AS FNGF    +  Y+D+
Sbjct: 395 VGDWIYFEDAGAYTVAAASCFNGFKTSRI-VYLDT 428


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 31.1 bits (67), Expect = 0.051
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
 Frame = -3

Query: 319 ESTTSPASRSGRNSFSIDQSRESTYALTPGTGNPLKVDATGIVYAPMSRHTTHSASDIAG 140
           +ST + ++ SG    S   S  S+   TP + +     ++     P+S   T S S  A 
Sbjct: 121 DSTLAASTISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSAS 180

Query: 139 SRVAATTQSSPSQV-GPHTEHGDERSQLTFSGSATT 35
           S V++++ SS   +     +     S  T SG +T+
Sbjct: 181 SSVSSSSASSSGSISSADAKTVSASSNSTISGFSTS 216


>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 27.5 bits (58), Expect = 0.63
 Identities = 20/55 (36%), Positives = 24/55 (43%)
 Frame = +1

Query: 181 WARTRCPSRPPSTGSRCPVSGHTSTHGSGRC*RSCVRSATPGWLSIRTSSAVAPP 345
           W R      P +TG   PVS + S         S +  A P  LS  TSSA +PP
Sbjct: 46  WLRPPGWQPPVNTGPTSPVSINASNAAPSNLKASYI-PANPRRLSSSTSSASSPP 99


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 0.63
 Identities = 22/98 (22%), Positives = 44/98 (44%)
 Frame = -3

Query: 328 NSCESTTSPASRSGRNSFSIDQSRESTYALTPGTGNPLKVDATGIVYAPMSRHTTHSASD 149
           +S  +TTSP+S S  +S S   S  S+ + +  + +     ++    +  S  ++ S+S 
Sbjct: 147 SSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--SSSSSSSSSSSSSS 204

Query: 148 IAGSRVAATTQSSPSQVGPHTEHGDERSQLTFSGSATT 35
            +   + ++T SS S     +      S+ + S S  T
Sbjct: 205 SSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFIT 242


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
 Frame = -3

Query: 346 EAEQPRNSCESTTSPASRSGRNSFSIDQSRESTYALTPGTGNPL---KVDATGIVYAPMS 176
           ++  PR    +TTSP      +S SI  +R ST    P +  P    K+     V AP  
Sbjct: 417 QSSTPRKPLPTTTSPKVNPEPHSESISDTRPSTPRKVPPSTVPKMNPKLQGGNSVTAP-- 474

Query: 175 RHTTHSASDIAGSRVAATTQSSPSQVGPHT 86
             T          +VA   Q   S   P T
Sbjct: 475 -STPSKVLPAMSPKVAPKFQGGRSSTAPST 503


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = -3

Query: 334 PRNSCESTTSPASRSGRNSFSIDQSRESTYALTPGTGNPLKVDATGIVYAPMSRHTTHSA 155
           P N+  +   P+SR  +N  ++D+SR S+ A  P   N L   A G      S  +T  +
Sbjct: 302 PHNTEFAQYQPSSRDLQNHPTVDESRLSSVA--PPASNTLN-HANGNQAENASESSTSQS 358

Query: 154 SDIAG 140
           +D  G
Sbjct: 359 NDSQG 363


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 307 SPASRSGRNSFSIDQSRESTYALTPGTGNPLKVDAT 200
           S ++R    + +I++ R S    +PG G P+  DAT
Sbjct: 22  SQSARVAAGNAAINRRRSSPVENSPGNGFPVSEDAT 57


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 345 RRSNRGTRANRQPARRRGADATPSASTRAVSRRMP 241
           RR +R  R  R  +RRR    +PSA   +     P
Sbjct: 199 RRRSRSRRPGRSRSRRRSRRPSPSAEHNSAEENDP 233


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +3

Query: 237  VRAYVDSRLWSMLKELRPLRDAGLVVDSHE--FRG 335
            +R Y+ + + S++    P+RDAG+ V+S E  F+G
Sbjct: 908  IRIYLQNGIQSIIDV--PIRDAGIFVESFECYFKG 940


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 54  NVSCERSSPCSVWGPTCDGLDCVVA 128
           +VSC+ +   S+W P+  GL  + A
Sbjct: 227 SVSCDLTDSYSLWDPSSSGLVSIYA 251


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +3

Query: 252 DSRLWSMLKELRPLRDAGLVVDSHEFR 332
           +S+L  MLKEL+  ++  + ++ H++R
Sbjct: 224 ESQLSDMLKELQNSKEIAVDLEHHDYR 250


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 237 VRAYVDSRLWSMLKELRPLRDAGLVVD 317
           VRA+ D+ +  +  ++ P+RD  ++VD
Sbjct: 123 VRAFDDAEIIHVEGDVDPIRDLSIIVD 149


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = -3

Query: 262 SRESTYALTPGTGNPLKVDATGIVYAPMSRHTTHSASDIAGSRVAATTQSSPSQ 101
           S E T  +TP T  P    +T   + P+S HT+ + +  +G    +++ S+ S+
Sbjct: 41  SSEFTSTITPET--PSSSSST---FVPISTHTSSATNTTSGQLSISSSSSTSSE 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,366,752
Number of Sequences: 5004
Number of extensions: 25977
Number of successful extensions: 101
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)