Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H15
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...    90   3e-19
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    57   2e-09
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy...    51   1e-07
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc...    42   9e-05
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    40   3e-04
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom...    38   0.002
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    28   1.2  
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    27   2.1  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    26   5.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.0  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   5.0  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    25   6.5  
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    25   6.5  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    25   8.7  

>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
           Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 40/98 (40%), Positives = 63/98 (64%)
 Frame = +3

Query: 3   GYDDQGPHIYQTCPSANFFDCRAMAIGARSQSARTYLEKHLSTFIDCDLQELVAHGLRAL 182
           GYD+ GPH+ +  PS    +    ++G+RSQSARTY+E++L TF D   +EL+   LRAL
Sbjct: 136 GYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSSREELILSALRAL 195

Query: 183 RDTLPNEMDLNNKNVSIAIVGPDTPLRVCEEEELGRFL 296
           RDTL  + +L  +NVSI+++G D    + ++ +   +L
Sbjct: 196 RDTLSKDQELTEENVSISVIGKDEKYTLYDQNDTKEWL 233


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 30/80 (37%), Positives = 48/80 (60%)
 Frame = +3

Query: 3   GYDDQGPHIYQTCPSANFFDCRAMAIGARSQSARTYLEKHLSTFIDCDLQELVAHGLRAL 182
           G D++GP +YQ  PS  +F  +A AIG  S +A+T+LEK  +   + +L + V   + AL
Sbjct: 138 GMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYND--ELELDDAVHTAILAL 195

Query: 183 RDTLPNEMDLNNKNVSIAIV 242
           ++T   E +L   N+ IA+V
Sbjct: 196 KETF--EGELTEDNIEIAVV 213


>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 31/99 (31%), Positives = 51/99 (51%)
 Frame = +3

Query: 3   GYDDQGPHIYQTCPSANFFDCRAMAIGARSQSARTYLEKHLSTFIDCDLQELVAHGLRAL 182
           G D+ GP +Y + PS  +F   A AIG+ S+ A++ L K      D  L+E     L+ L
Sbjct: 146 GIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHK--DMTLEEAEVLILKVL 203

Query: 183 RDTLPNEMDLNNKNVSIAIVGPDTPLRVCEEEELGRFLA 299
           R  +  ++D  +KNV +A V  +    +  +EE+   +A
Sbjct: 204 RQVMEEKLD--SKNVQLAKVTAEGGFHIYNDEEMADAVA 240


>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
 Frame = +3

Query: 9   DDQGPHIYQTCPSANFFDCRAMAIGARSQSARTYLEKHL-STFIDCDLQELVAHGLRALR 185
           D+ GP +++  P+  +   +A + G +      +LEK      I  +L + V  G++AL 
Sbjct: 143 DEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKDGIPSNLTDTVETGIQALM 202

Query: 186 DTLPNEMDLNNKNVSIAIVGPDTPLRVCEEEEL 284
            +L    D  +  + I +V  D P RV   EE+
Sbjct: 203 SSL--STDFKSTELQIGVVEDDKPFRVLSVEEI 233


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
 Frame = +3

Query: 3   GYD--DQGPHIYQTCPSANFFDCRAMAIGARSQSARTYLEKHLSTFIDCDLQELVAHGLR 176
           G+D  D  P +YQT P+  +   +A AIG  S++AR YLEK+    +  D  E +   + 
Sbjct: 136 GFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKEGLSRD--ETIHLAVS 193

Query: 177 ALRDTLPNEMDLNNKNVSIAIVGPDTPLRVCEEEELGRFLALVEGEE 317
           +L + +       + N+ +AI+ P   +     +++   +  ++ E+
Sbjct: 194 SLLEVVQTA----SGNIELAIMDPGKDVEFLHSDKIDTIVKEIQDEK 236


>SPCC1795.04c |||20S proteasome component alpha
           7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 253

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
 Frame = +3

Query: 6   YDDQGPHIYQTCPSANFFDCRAMAIGARSQSARTYLEKHLSTFIDCDLQELVAHGLRALR 185
           YD +GPH+Y   P+  ++     A G   Q AR  LEK    F    +++ V    R L 
Sbjct: 140 YDSEGPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEK--LNFSSLKMKDAVKEAARILY 197

Query: 186 DTLPNEMDLNNK--NVSIAIVGPDT 254
            T   E   NNK   + +  VG +T
Sbjct: 198 ATHDEE---NNKEHEIEMTWVGVET 219


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -2

Query: 289 LPSSSSSQTRKGVSGPTIAIDTFLLLRSIS 200
           +PSSSS+++R G   P+I  D+ L L S S
Sbjct: 103 IPSSSSNRSRGGPYTPSIRDDSLLALLSFS 132


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 3   GYDDQGPHIYQTCPSANFFDCRAMAIGARSQSARTYLE-KHLSTFIDCDLQELVAHGLRA 179
           GYD +GPH++      +      +A+G+ S +A + LE K+       +  ELV   + A
Sbjct: 137 GYDCKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEA 196


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 101 GGLRARTNRHCATVEKVSRWTCLIYVRSL 15
           G L+ R   +C + +++S+W  +IY  +L
Sbjct: 598 GSLQDRARIYCLSDDELSKWKTIIYKENL 626


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 315 PHPRPEPGTCRVPPPRKHVRVYPDP 241
           P PR  P T R PPP    R   +P
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNP 388


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 289 LPSSSSSQTRKGVSGPTIAIDTFLLLRSISFGSVSL 182
           + S S S +  G+S P+ ++D+     +  FGS+SL
Sbjct: 480 MTSKSISPSLSGISAPSASVDSSASRLARDFGSLSL 515


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 309 PRPEPGTCRVPPPRKHVRVYPDP 241
           P   PG   VPPP   V VYP+P
Sbjct: 23  PDSVPGL--VPPPSNFVPVYPEP 43


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 247 RIHPYVFARRRNSAGSW 297
           RIHP   ARR N  G W
Sbjct: 74  RIHPIPKARRNNHVGRW 90


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +2

Query: 461 ILPSSEVPLLPSNIIFYTVIIF----KWVLPSTIHFHNKEM 571
           +LP     + PS+++FY V++     K VL S    H+KE+
Sbjct: 649 LLPKDLANIQPSDLLFYAVLLVLINGKLVLLSLKKQHSKEL 689


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,645
Number of Sequences: 5004
Number of extensions: 53423
Number of successful extensions: 148
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)