Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_H15
(608 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 5e-32
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35) 41 7e-04
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0) 31 0.97
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_48669| Best HMM Match : DUF1298 (HMM E-Value=0.0015) 28 5.1
SB_11302| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6) 27 9.0
>SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 134 bits (324), Expect = 5e-32
Identities = 57/96 (59%), Positives = 76/96 (79%)
Frame = +3
Query: 12 DQGPHIYQTCPSANFFDCRAMAIGARSQSARTYLEKHLSTFIDCDLQELVAHGLRALRDT 191
D GPHI+QTCPSAN+FDC+AMAIGARSQSARTYLEK+L F DC+ +EL+ HGL+ALR+T
Sbjct: 1 DMGPHIFQTCPSANYFDCKAMAIGARSQSARTYLEKYLDAFGDCEPEELIKHGLKALRET 60
Query: 192 LPNEMDLNNKNVSIAIVGPDTPLRVCEEEELGRFLA 299
LPNE +L KN SI +VG D + ++++ +++
Sbjct: 61 LPNEQELTTKNCSIGLVGKDQDFVIYNDDDVAPYVS 96
>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
Length = 224
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Frame = +3
Query: 9 DDQGPHIYQTCPSANFFDCRAMAIGARSQSARTYLEKHLSTFIDCDLQELVAHGLRALRD 188
+++GP +Y+T P+ F +A ++G + A ++LEK + E V + L
Sbjct: 123 EEKGPQLYKTDPAGYFCGFKACSVGVKQTEANSFLEKKVKKKHAWTFNETVETAISCLSS 182
Query: 189 TLPNEMDLNNKNVSIAIVGPDTP-LRVCEEEELGRFLALV 305
L D + + +V D P R E E+ L +
Sbjct: 183 VL--SADFKPSELEVGVVSMDNPRFRKLTEAEIDTHLVAI 220
>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
Length = 215
Score = 30.7 bits (66), Expect = 0.97
Identities = 9/33 (27%), Positives = 24/33 (72%)
Frame = +3
Query: 219 KNVSIAIVGPDTPLRVCEEEELGRFLALVEGEE 317
KN+ +A++ P+R+ + +E+ +F+A++E ++
Sbjct: 166 KNIELAVMKKGEPMRILKPDEVDKFVAIIEKDK 198
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 30.7 bits (66), Expect = 0.97
Identities = 18/29 (62%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = -3
Query: 321 GAPHPR-PEPGT--CRVPPP-RKHVRVYP 247
GAPHPR P PG RVPPP H RV P
Sbjct: 535 GAPHPRVPPPGAPHPRVPPPGASHPRVPP 563
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/29 (62%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = -3
Query: 321 GAPHPR-PEPGT--CRVPPP-RKHVRVYP 247
GAPHPR P PG RVPPP H RV P
Sbjct: 445 GAPHPRVPPPGAPHPRVPPPGAPHPRVPP 473
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/29 (62%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = -3
Query: 321 GAPHPR-PEPGT--CRVPPP-RKHVRVYP 247
GAPHPR P PG RVPPP H RV P
Sbjct: 475 GAPHPRVPPPGAPHPRVPPPGAPHQRVPP 503
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/29 (62%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = -3
Query: 321 GAPHPR-PEPGT--CRVPPP-RKHVRVYP 247
GAPHPR P PG RVPPP H RV P
Sbjct: 505 GAPHPRVPPPGAPHPRVPPPGAPHPRVPP 533
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/29 (62%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = -3
Query: 321 GAPHPR-PEPGT--CRVPPP-RKHVRVYP 247
GAPHPR P PG RVPPP H RV P
Sbjct: 565 GAPHPRVPPPGAPHPRVPPPGTPHPRVPP 593
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/29 (58%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Frame = -3
Query: 321 GAPHPR-PEPGTC--RV-PPPRKHVRVYP 247
GAPHPR P PG RV PP H RV P
Sbjct: 405 GAPHPRVPPPGASHQRVRPPGAPHPRVPP 433
>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 190 HSQMKWILIIKMCQ*RLWVRIHPYVFARRRNSAGSWLWSRVRSA 321
H++ +W ++ Q + W+R+H Y R +WLW SA
Sbjct: 153 HAECRWDT--ELTQAKNWMRVHFYETLRFLRGRRNWLWVLEHSA 194
>SB_48669| Best HMM Match : DUF1298 (HMM E-Value=0.0015)
Length = 529
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 416 GITAERLQETSEEMTILPSSEVPLLPSNIIFYTVIIFKWVLPSTIHFHNKEM 571
G ERL E M ++ +S PL+ S + +++ W I+F + +M
Sbjct: 282 GSPLERLYAAKERMDVIKTSAEPLVTSTTVTLLMMLPGWFSRVLINFFSNKM 333
>SB_11302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -2
Query: 292 NLPSSSSSQTRKGVSGPTIAI 230
NLP+S SS T K V GP+I I
Sbjct: 129 NLPASLSSYTVKAVEGPSILI 149
>SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)
Length = 479
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 286 AGSWLWSRVRSAAAVPQPPETQELHSQEIRG 378
AG W W ++A VP PP L + RG
Sbjct: 207 AGKWSWEYYDASAEVPPPPYGHCLWEEYARG 237
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,270,759
Number of Sequences: 59808
Number of extensions: 440372
Number of successful extensions: 1104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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