Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_H14
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0053 - 20537433-20537833,20537910-20538456 29 1.3
10_08_0150 + 15227739-15228140 29 1.7
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 29 2.3
11_01_0306 + 2301575-2302480 28 4.0
06_03_1370 + 29645598-29646288,29646364-29646752 28 4.0
02_05_0514 + 29686263-29686728,29687078-29687313,29687435-296875... 28 4.0
06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089 27 5.3
05_05_0325 + 24109469-24109665,24110284-24110400,24110497-241109... 27 5.3
01_06_1041 - 34036748-34037137,34037238-34037664,34037775-340378... 27 5.3
02_05_0604 - 30299794-30300041,30300094-30300157 27 7.0
12_01_0646 + 5474234-5476189 27 9.2
09_04_0084 - 14424740-14425081 27 9.2
09_04_0072 + 14323449-14324274,14324351-14324447,14325175-143252... 27 9.2
05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563 27 9.2
03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917 27 9.2
>09_06_0053 - 20537433-20537833,20537910-20538456
Length = 315
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = -2
Query: 314 GIGGGAGCASQCCVCSQRISSCGTCPPFRCRTLCCAPS*KCST 186
G GGG G C C + C RCRT C + C+T
Sbjct: 86 GGGGGGGGGISCQDCGNQAKK--DCTHMRCRTCCKSRGFACAT 126
>10_08_0150 + 15227739-15228140
Length = 133
Score = 29.1 bits (62), Expect = 1.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 317 EGIGGGAGCASQCCVC 270
+G+GGG A+ CCVC
Sbjct: 41 DGVGGGQAAAAGCCVC 56
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -2
Query: 323 LDEGIGG-GAGCASQCCVCSQRISSCGTCPPFRCRTLCCAPS*KCST 186
LD G G G+G A+ C C + C RCRT C + CST
Sbjct: 617 LDTGGGSSGSGGAATCQDCGNQAKK--DCGHQRCRTCCKSRGFDCST 661
>11_01_0306 + 2301575-2302480
Length = 301
Score = 27.9 bits (59), Expect = 4.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 314 GIGGGAGCASQCCVC 270
G GGG G A+QC +C
Sbjct: 227 GCGGGGGAAAQCVIC 241
>06_03_1370 + 29645598-29646288,29646364-29646752
Length = 359
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = -2
Query: 314 GIGGGAG---CASQCCVCSQRISSCGTCPPFRCRTLCCAPS*KCST 186
G GGGAG + C C C RCRT C + C+T
Sbjct: 119 GPGGGAGGGRAGTSCQDCGNNAKK--DCSHLRCRTCCRSRGFSCAT 162
>02_05_0514 +
29686263-29686728,29687078-29687313,29687435-29687575,
29687685-29687915
Length = 357
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 188 WNTFKMEHSKVYDNEMEDKFRMKIYAENKHNIAKHNQR 301
+ ++ ++HSK+Y + E R +I+ N +I + N+R
Sbjct: 46 FTSWSVKHSKIYASPKEKVKRYEIFKRNLRHIVETNRR 83
>06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089
Length = 495
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 305 GGAGCASQCCVCSQRISSCGTCPPFRC 225
GGAGC +CC C SS +C C
Sbjct: 356 GGAGCD-RCCACHVEESSSCSCAALVC 381
>05_05_0325 +
24109469-24109665,24110284-24110400,24110497-24110914,
24110997-24111416
Length = 383
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 288 FAMLCLFSAYIFMRNLSSISLSYTLLCSILKVFHSSF 178
FAM+CL Y M ++ +SL++ + +L V+ +F
Sbjct: 16 FAMICLQFGYAGMNVITKVSLNHGMSHYVLVVYRHAF 52
>01_06_1041 -
34036748-34037137,34037238-34037664,34037775-34037891,
34038171-34038233,34038333-34038532
Length = 398
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 288 FAMLCLFSAYIFMRNLSSISLSYTLLCSILKVFHSSF 178
FAM+CL Y M ++ +SL++ + +L V+ +F
Sbjct: 17 FAMICLQFGYAGMNVITKVSLNHGMSHYVLVVYRHAF 53
>02_05_0604 - 30299794-30300041,30300094-30300157
Length = 103
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Frame = -2
Query: 293 CASQCC--VCSQRISSCGTCPPFRCRTLCCAP 204
C C +CS R + G C P C+ C P
Sbjct: 60 CDPDSCKAICSLRYNGVGVCDPVGCQCTYCHP 91
>12_01_0646 + 5474234-5476189
Length = 651
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 188 WNTFKMEHSKVYDNEMED 241
WNTF EH +D MED
Sbjct: 423 WNTFLHEHLDNFDGSMED 440
>09_04_0084 - 14424740-14425081
Length = 113
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -2
Query: 323 LDEGIGG--GAGCASQCCVCSQRISSCG 246
LD+G G GAGC+ C I++CG
Sbjct: 56 LDDGAGDAVGAGCSCSTTKCKTCIATCG 83
>09_04_0072 +
14323449-14324274,14324351-14324447,14325175-14325277,
14325359-14325412,14325495-14325569,14325597-14325650,
14325687-14325755,14325840-14325923,14326115-14326312,
14326428-14326927,14327011-14327140,14328226-14328317,
14328776-14328954,14329114-14329316,14329398-14329499,
14330047-14330209,14330690-14330979,14331088-14331225,
14331311-14331390,14331510-14331606,14331685-14331814,
14331921-14332162
Length = 1301
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 187 VEHFQDGAQQSVRQRNGGQVPHE 255
++HF+D S RNG +PHE
Sbjct: 831 LDHFRDAFDWSEADRNGRIIPHE 853
>05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563
Length = 571
Score = 26.6 bits (56), Expect = 9.2
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 161 SFFDLVKEEWNTFKMEHSKVYDNEMEDKF-RMKIYAENKHNIAKHNQRRLL 310
S D+ KEE+N K HS V NE +F ++ YA + + K R+ L
Sbjct: 395 STIDMKKEEFNRLKQGHSSV--NEYLSQFNKLARYAPEEVDTDKKKIRKFL 443
>03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917
Length = 447
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -2
Query: 323 LDEGIGGGAGCASQCCV--CSQRISSCGTCPPFRCRT 219
+D G GGG G C S R SSC P CRT
Sbjct: 221 VDTGFGGGGGSGEAHCTPRTSSRRSSCYATP--LCRT 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,607,684
Number of Sequences: 37544
Number of extensions: 138468
Number of successful extensions: 522
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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