Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H11
         (227 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    25   1.8  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    24   2.4  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    23   4.1  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    23   7.2  

>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -1

Query: 182 ELKLYLLGGHYFIHLH*RNIHLVISFNAKIIQYISKFRYIELV 54
           E  LY     YF+HL   N+ +++      +  ISK  +  ++
Sbjct: 423 ERALYFFNNDYFVHLVEENVDIILPIIYPALFEISKSHWNRVI 465


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 4   NLTSDSHSLNISNQYLPTNS 63
           N +SDS  LN  N++LP +S
Sbjct: 276 NTSSDSQRLNHQNRHLPDDS 295


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = -1

Query: 119 LVISFNAKIIQYISKFRYIE 60
           L ++ N +++QYI K+R+++
Sbjct: 132 LELAPNGELLQYIKKYRFLD 151


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 1   GNLTSDSHSLNISNQYLPTN 60
           G L  D HS+++ N+  P N
Sbjct: 65  GKLVIDGHSIDVHNERDPAN 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 542,270
Number of Sequences: 5004
Number of extensions: 7643
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 55
effective length of database: 2,087,258
effective search space used: 41745160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)