Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H11
         (227 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53537| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               26   4.2  
SB_49939| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  

>SB_53537| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 379

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 176 KLYLLGGHYFIHLH*RNIHLVISFNAKIIQYIS 78
           KL+ +   YFI+    N H V   NA+II Y S
Sbjct: 121 KLFWIPDTYFINAKKSNFHKVTKENARIIIYPS 153


>SB_49939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 25  SLNISNQYLPTNSMYLNLDIY 87
           S +IS QYLPT+ M+ N+  Y
Sbjct: 169 SRSISFQYLPTDDMFYNMYQY 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,553,043
Number of Sequences: 59808
Number of extensions: 46916
Number of successful extensions: 75
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 16,821,457
effective HSP length: 53
effective length of database: 13,651,633
effective search space used: 300335926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)