Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H11
         (227 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28412-7|AAC46597.2|  201|Caenorhabditis elegans Hypothetical pr...    28   0.78 
Z81593-11|CAI94505.2|  360|Caenorhabditis elegans Hypothetical p...    25   7.2  
Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical pr...    25   9.6  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    25   9.6  

>U28412-7|AAC46597.2|  201|Caenorhabditis elegans Hypothetical
           protein T19C3.6 protein.
          Length = 201

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 97  FALNDITKCIFRQCKCMK*C 156
           FA+ D  K IF +CK MK C
Sbjct: 60  FAMKDTMKSIFAECKAMKTC 79


>Z81593-11|CAI94505.2|  360|Caenorhabditis elegans Hypothetical
           protein T20B3.16 protein.
          Length = 360

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 149 FIHLH*RNIHLVISFNAKIIQYISKFRYI 63
           F+HLH + I +V++F   II   + F Y+
Sbjct: 14  FLHLHWKIILIVVTFELVIIIGTAYFTYV 42


>Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical
           protein ZK1067.5 protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 122 HLVISFNAKIIQYISKFRYIELVGKY 45
           H++   N  + QYISK+  + +V  Y
Sbjct: 90  HMLYHTNTYLFQYISKYCSVSIVSHY 115


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 167  LLGGHYFIHLH*RNIHLVISFNAKIIQYISKFRYI 63
            +LGG+ ++     +IH +  F  K  +Y+ K R +
Sbjct: 1532 VLGGYIYLITRQGSIHRMHKFTGKTNKYVQKIREV 1566


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,027
Number of Sequences: 27780
Number of extensions: 39568
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 12,740,198
effective HSP length: 55
effective length of database: 11,212,298
effective search space used: 224245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)