Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_H10
(417 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po... 29 0.22
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 27 1.5
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 27 1.5
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 27 1.5
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 3.6
SPAC694.03 |||conserved fungal protein|Schizosaccharomyces pombe... 25 6.2
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ... 25 6.2
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 25 6.2
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 24 8.2
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces... 24 8.2
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An... 24 8.2
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p... 24 8.2
>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 29.5 bits (63), Expect = 0.22
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +2
Query: 8 AVQIQEAYA-YKMNVNFLASGANNVGVGSAGSGIYSGKAGSLISIMPGVPTTRLLVSRVP 184
++Q+Q Y ++ N L G S I+S K G I + TT+L ++ P
Sbjct: 86 SMQVQRPYTPLYLDANELKFFIRKYEEGPVSSYIHSKKEGDTIELRGPFKTTKLDCTKYP 145
Query: 185 KVPGQVSGESYPGPIY 232
++ V+G PIY
Sbjct: 146 RIVAIVAGTGI-APIY 160
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.6 bits (56), Expect = 1.5
Identities = 21/83 (25%), Positives = 35/83 (42%)
Frame = +3
Query: 150 FQLHGYLSQEYLKFQGRYLENHTQVQSTITRRIMXXXXXXXXXXXXXXSADLWYRDPKSL 329
F +H Y+ Q LKFQ + E+H + + ++ + +L Y DPK L
Sbjct: 677 FYVHPYIKQGILKFQSK--ESHKFRKKEVWSTVLAVLQRDVFTLYNLNTPNLSY-DPKDL 733
Query: 330 H*WIKMSAAILKSDSTKPEATPF 398
K+ ++K+ A PF
Sbjct: 734 D-ISKVGKPVIKTTIIASLAKPF 755
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 26.6 bits (56), Expect = 1.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 148 SWHDADQRTCFTGIYSRTCRSDTNVIGPRSQKVHVHFVRIC 26
S+ D +T +SRT R + + P+S + V + RIC
Sbjct: 385 SYSDLRFELLYTESHSRTLRHEKRHVSPKSPLIDVCWWRIC 425
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 26.6 bits (56), Expect = 1.5
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 200 VSGESYPGPIYDNPSDHDGLRLITDPSLVSHISRPLVQGSQEF 328
+SG P P+ NPSD D + T+ L H ++ F
Sbjct: 69 LSGVEEPVPVESNPSDQDVMSNSTEADLQLHTKNEHLEKRHSF 111
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 3.6
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 71 NNVGVGSAGSGIYSGKAGSLIS 136
NN+G GSAGSG++S G+ +S
Sbjct: 286 NNMG-GSAGSGVWSSCFGNSLS 306
>SPAC694.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 249
Score = 24.6 bits (51), Expect = 6.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 121 CFTGIYSRTCRSDTNVIGPRSQKVHVHF 38
C ++ CRS +N +GPR Q V F
Sbjct: 103 CKHALFVDKCRSISNKLGPREQVYLVGF 130
>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
Atp23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 185
Score = 24.6 bits (51), Expect = 6.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 40 NERELSGFWGQ*RWCRICRFGNIFR*SRFFDQHH 141
+E S G+ RW + RFGNI + F +HH
Sbjct: 110 SEIRASSMSGECRWTKELRFGNI----KTFRKHH 139
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 24.6 bits (51), Expect = 6.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 119 LYRNIFPNLQIRHQRYWPQKPES 51
L+R+++ N + Q YWP PES
Sbjct: 491 LHRDLYVN--VLSQAYWPSYPES 511
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 24.2 bits (50), Expect = 8.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 278 SLVSHISRPLVQGSQEFTLVDKDVSCHFKIRLNQAGGDT 394
+L S ++ P+V+ ++ T DK KI + +GGD+
Sbjct: 168 NLESGLATPVVETLKKATTSDKPAGVKKKIAVMTSGGDS 206
>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 95 GSGIYSGKAGSLISIMPG 148
GSGI +G G + SI PG
Sbjct: 366 GSGILNGDKGDVASISPG 383
>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
family |Schizosaccharomyces pombe|chr 2|||Manual
Length = 430
Score = 24.2 bits (50), Expect = 8.2
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = -3
Query: 157 SWNSWHDADQRTCFTGIYSRTCRSDTNVIGP 65
SW W D D T I R D ++I P
Sbjct: 215 SWVYWRDVDVETAPNTILEDLMRHDKDIIVP 245
>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 340
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 272 DPSLVSHISRPLVQGSQEFTLV 337
DPS V ++ PL+ GSQ T +
Sbjct: 71 DPSRVGKVANPLLNGSQLDTTI 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,867,893
Number of Sequences: 5004
Number of extensions: 39410
Number of successful extensions: 124
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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