Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_H10
(417 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0491 + 3789264-3789596,3789999-3790071,3790260-3790327,379... 30 0.65
09_04_0382 + 17135554-17136468,17136762-17136833,17137675-171377... 30 0.86
02_05_1315 + 35675285-35676688,35676816-35677255,35677341-35678784 30 0.86
06_02_0208 - 13026296-13026654,13027394-13027497,13028109-130282... 29 2.0
04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733... 29 2.0
07_03_1546 + 27602598-27602917,27602995-27603052,27603130-276032... 28 2.6
04_04_0632 + 26738969-26739350,26739535-26739543,26739674-267405... 28 2.6
08_02_0669 + 19868149-19870179 28 3.5
02_02_0199 - 7710487-7710804,7710907-7711298,7711543-7711878,771... 28 3.5
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 27 4.6
02_05_0510 + 29637160-29637506,29637714-29637775,29638047-296381... 27 6.0
02_02_0521 - 11156594-11156956,11157097-11157483,11158327-111583... 27 6.0
11_06_0625 - 25612569-25612573,25613214-25613457,25613615-256137... 27 8.0
02_02_0188 + 7617838-7620231,7621856-7622071,7622167-7622328,762... 27 8.0
01_01_0820 - 6395150-6395769,6395865-6396294 27 8.0
>11_01_0491 +
3789264-3789596,3789999-3790071,3790260-3790327,
3790754-3790842,3791544-3791715,3791839-3791907,
3792129-3792296,3792666-3792833,3792916-3793011
Length = 411
Score = 30.3 bits (65), Expect = 0.65
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Frame = +2
Query: 26 AYAYKMNVNFLASGANNVGVGSAGSGIYSGKAGSLISIMPGVPTTRLLVSR-VPKVPGQV 202
AYA M V FL GA V V AG+G + + V + L++ R +P++ +
Sbjct: 48 AYAASMLVVFLGGGAGGVAVAGAGAGALRQRGAP--APAGSVYRSHLVLDRLLPEL--RA 103
Query: 203 SGESYPGPIYDNPSDHDGLRLITDPSLVSHISRPLVQGSQEFTLVD 340
S S P P+ + G R P + + R + S F +++
Sbjct: 104 SSASRPHPLMTPQNKKSGKRWA--PCITKKLRRSELPPSNGFLIIE 147
>09_04_0382 +
17135554-17136468,17136762-17136833,17137675-17137704,
17138744-17138817,17140022-17140367
Length = 478
Score = 29.9 bits (64), Expect = 0.86
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -1
Query: 219 GYDSPDTCPGTLGTLETSNRVVGTPGMMLIKEPALPEYIPEPADPTPTLLAPEARKF 49
G D P TLG + +V G++ PA P +P P P P + P+ F
Sbjct: 136 GGDMPPQRQSTLGEMTLEEFLVRA-GVVRENPPAAPPPVPPPMPPRPVPVVPKTTAF 191
>02_05_1315 + 35675285-35676688,35676816-35677255,35677341-35678784
Length = 1095
Score = 29.9 bits (64), Expect = 0.86
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 128 LISIMPGVPTTRLLVSRVPKVPGQVSGESYPGPIYDNPSDHDGLRLITDPSLVSHI 295
++S +PG L+ + + P V+ S+PGP++D PS L + P L S+I
Sbjct: 620 MLSCIPGKKLRHLM--GIGEQPAGVT-PSHPGPLFDVPSPRPAQDLKSMPDLASYI 672
>06_02_0208 -
13026296-13026654,13027394-13027497,13028109-13028200,
13028418-13028774,13029932-13030109,13030454-13030507,
13030701-13030784,13031521-13031714
Length = 473
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 129 KEPALPEYIPEPADPTPTLLAPEAR 55
++P PE PEPA P P A EA+
Sbjct: 8 QQPQQPESEPEPAAPAPAAAAAEAK 32
>04_03_0927 +
20871487-20871903,20872667-20872812,20873204-20873301,
20873378-20873572,20873670-20873797,20873892-20874050,
20875119-20875223,20875449-20875559,20875653-20875790,
20875909-20876091,20876362-20876517,20876615-20876738,
20876820-20877030,20877614-20877729,20877828-20878053,
20878218-20878311,20879198-20879275,20879822-20879971,
20880086-20880292,20880584-20880788,20880990-20881096
Length = 1117
Score = 28.7 bits (61), Expect = 2.0
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +2
Query: 113 GKAGSLISIMPGVPTTRLLVSRVPKVPGQVSGESYPGPIYDNPSDHDGLRLITDPSLVSH 292
G A + TR ++ V +P G P+ D+ LRLITD S+ S
Sbjct: 150 GGAAPTVDQKAAAAATRKALTNVQTLP---RGVEVLDPLGLGVIDNKSLRLITDASVSSP 206
Query: 293 ISRPLVQG 316
+SR QG
Sbjct: 207 VSREKAQG 214
>07_03_1546 + 27602598-27602917,27602995-27603052,27603130-27603252,
27603896-27603992,27604095-27604131,27604244-27604349,
27604547-27604604,27604705-27604802,27604911-27605030,
27605622-27605667,27606336-27606522,27606747-27607263,
27607361-27607453,27608101-27608286,27608364-27608574,
27609263-27609387,27609518-27609664,27610114-27610236,
27610445-27610799,27611076-27611305,27611785-27611877
Length = 1109
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 149 VPTTRLLVSRVPKVPGQVSGESYPGPIYDNPS 244
VPT VS VPG + +PGP+ +NP+
Sbjct: 918 VPTAPPAVSSAT-VPGTTPSQMFPGPVANNPT 948
>04_04_0632 +
26738969-26739350,26739535-26739543,26739674-26740545,
26743048-26743098,26743966-26744127,26744278-26744519,
26744772-26744859,26744964-26745158
Length = 666
Score = 28.3 bits (60), Expect = 2.6
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = -1
Query: 378 WLSLILKWQLTSLSTNVNSWDPCTKGLLMCDTKDGSVINLRPS*S-DGLS*IGPGYDSPD 202
W SL + + L+ N N + +M DTK GS + P + L G +D D
Sbjct: 417 WASLQVSMIIFILNANENKGEKSIPRTVMLDTKTGSNLLQWPVVEVENLRMRGKSFDGLD 476
Query: 201 TCPGTLGTLE 172
PG++ L+
Sbjct: 477 VSPGSVVPLD 486
>08_02_0669 + 19868149-19870179
Length = 676
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +2
Query: 5 TAVQIQEAYAYKMNVNFLAS--GANNVGVGSAGSGIYSGKAGSLISIMPG 148
T V++ AY+ N L S G G G G + +G +L S++PG
Sbjct: 501 TLVRLVREGAYRGRKNALVSLYGVLQRGAGGHGRAVSAGAVAALASLLPG 550
>02_02_0199 -
7710487-7710804,7710907-7711298,7711543-7711878,
7711971-7711996,7712466-7712525,7712625-7712696,
7712784-7712927,7714165-7714236,7714350-7714482,
7714572-7714680
Length = 553
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/34 (38%), Positives = 25/34 (73%)
Frame = -1
Query: 333 NVNSWDPCTKGLLMCDTKDGSVINLRPS*SDGLS 232
++NS DPCT ++ C + DG V++L+ + ++GL+
Sbjct: 58 DINSVDPCTWSMVAC-SPDGFVVSLQMA-NNGLA 89
>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 27.5 bits (58), Expect = 4.6
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 86 GSAGSGIYSGKAGSLISIMPGVPTTRLLVSRVPKVPGQVSGESYPGPIYDN-PSD 247
GS SG+ S SI P +PT + +R+P PG V G + P P N P D
Sbjct: 1375 GSHASGLMLPNHPS--SIGPTLPTGNMN-TRLPGSPGMVLGNTLPSPSTPNTPRD 1426
>02_05_0510 +
29637160-29637506,29637714-29637775,29638047-29638161,
29638296-29638419,29638604-29638684,29639122-29639463,
29639562-29639728,29639810-29640639,29641103-29642568
Length = 1177
Score = 27.1 bits (57), Expect = 6.0
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 2 LTAVQIQEAYAYKMNVNFLASGANNVGVGSAGSGIYSGKAGSLISIMPGV 151
LT + Q AY Y++ N+L + S+ + G G S+MP V
Sbjct: 345 LTEWEFQPAYYYQLAANYLREKRYALEFSSSSVSLTKGVNGLPESVMPSV 394
>02_02_0521 -
11156594-11156956,11157097-11157483,11158327-11158383,
11159671-11159970
Length = 368
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 59 ASGANNVGVGSAGSGIYSGKAGSLISIMPGVP 154
A+ A NV V SAGSG +G G + ++ G P
Sbjct: 42 AAAAVNVVVVSAGSGGGAGGGGGGVGVVAGAP 73
>11_06_0625 -
25612569-25612573,25613214-25613457,25613615-25613722,
25614140-25614661
Length = 292
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 74 NVGVGSAGSGIYSGKAGSLISIMPGVP 154
+VGV AGSG GK ++ + + GVP
Sbjct: 64 HVGVDPAGSGSGGGKRRTIAAALAGVP 90
>02_02_0188 + 7617838-7620231,7621856-7622071,7622167-7622328,
7622466-7622516,7622936-7623070,7623161-7623184,
7623341-7623452,7623776-7623901,7624004-7624053,
7624339-7624497,7624582-7624677,7624751-7624866,
7624907-7624984,7624985-7625108,7625193-7625306,
7625423-7625503,7625616-7625756,7625834-7625848
Length = 1397
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 275 PSLVSHISRPLVQGSQEFTLVDKDVSCHFKIRLNQAG 385
P + H +RP+V S T ++ + +C F + ++ AG
Sbjct: 1213 PRINEHCNRPIVWKSSRLTRINDNSTCRF-VHVSSAG 1248
>01_01_0820 - 6395150-6395769,6395865-6396294
Length = 349
Score = 26.6 bits (56), Expect = 8.0
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 95 GSGIYSGKAGSLISIMPGVPTTRLLVSRVPKVPGQVSGESY 217
GSG++ G GS PTT V+ V SG+ Y
Sbjct: 268 GSGVFPGPCGSGSGAAAAAPTTNHAVTLVGYCQDGASGKKY 308
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,486,934
Number of Sequences: 37544
Number of extensions: 275304
Number of successful extensions: 1095
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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