Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H10
         (417 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.095
SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)             32   0.17 
SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_30922| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_30579| Best HMM Match : RVT_1 (HMM E-Value=0.00034)                 29   2.0  
SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.7  
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)                27   4.7  
SB_7295| Best HMM Match : FerB (HMM E-Value=3.2)                       27   4.7  
SB_18313| Best HMM Match : Trans_reg_C (HMM E-Value=0.91)              27   4.7  
SB_57514| Best HMM Match : EGF_CA (HMM E-Value=2.4e-20)                27   6.2  
SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)           27   6.2  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1353

 Score = 33.1 bits (72), Expect = 0.095
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = +2

Query: 8    AVQIQEAYAYKMNVNFLASGANNVGVGSAGSGIYSGKAGSLISIMPGVPTTRLLVSRVPK 187
            A+    ++A  + VNFLA+  +     + GSGIYS  +G+         + +LL++ +PK
Sbjct: 1086 AIGFHSSWARGIGVNFLAANTHVPSFANTGSGIYS-SSGAREYYRSFSASGKLLIASLPK 1144

Query: 188  VP 193
             P
Sbjct: 1145 SP 1146


>SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)
          Length = 839

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +2

Query: 2   LTAVQIQEAYAYKMNVNFLASGANNVGVGSAGSGIYS 112
           L +VQ Q++++    VN LA+  N   +G  GSGIYS
Sbjct: 527 LHSVQYQQSWSRVTCVNLLAANQNQPALGMWGSGIYS 563


>SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1758

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 116 KAGSLISIMPGVPTTRLLVSRVPKVPGQVSGESYPGPIYDNPSDHD 253
           +A + + + P   T  L+ S +  V GQ+SGE  P P    P  HD
Sbjct: 26  EANTPVEVPPQTRTDALVESAIANVRGQLSGEKDPPP----PPTHD 67


>SB_30922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 173 SRVPKVPGQVSGESYPGPIYDNPSDHDGLRLITDPSLVSH 292
           +RV   P Q   +SY    Y N + HD  ++  DP  + H
Sbjct: 6   NRVKDDPNQSKNDSYQIKNYQNQTKHDPNKINHDPDQIKH 45


>SB_30579| Best HMM Match : RVT_1 (HMM E-Value=0.00034)
          Length = 654

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 116 KAGSLISIMPGVPTTRLLVSRVPKVPGQVSGESYPGPIYDNPSDHD 253
           +A + + + P   T  L+ S +  V GQ+SGE  P P    P  HD
Sbjct: 56  EANTPVEVPPQTRTDALVESAIANVRGQLSGEKDPPP----PPTHD 97


>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2143

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +2

Query: 20  QEAYAYKMNVNFLASGANNVGVGSAGSGIYSGKAGSLISIMPGVPTTRLLVSRVPKVPG- 196
           Q A+  +++       AN VGV S   GI S   GS+ S +       + + R P   G 
Sbjct: 346 QNAFTARVSTPSAGVPANTVGVSSHIIGISSPAVGSIGSPVAMNGPMFVPIQRAPMSNGY 405

Query: 197 -QVSGESYPG 223
            QV+   YPG
Sbjct: 406 AQVAVNGYPG 415


>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
          Length = 820

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +2

Query: 38  KMNVNFLASGANNVGVGSAGSGIYSGKAGSLISIMPGVPTTRLLVSRVPKVPGQVSGESY 217
           + N + L  G+ N  + S  S + S   G+  S  PG+P +    S  P  P  ++  S 
Sbjct: 657 RTNSDLLLHGSLNSLMASRESLVKSSPPGN--SSSPGIPPSGPANSFPPVTPTSLTANSS 714

Query: 218 PGPIYDNPSDH 250
           P  I  +P D+
Sbjct: 715 PSGIPPSPPDN 725


>SB_7295| Best HMM Match : FerB (HMM E-Value=3.2)
          Length = 144

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 399 GKVSPPAWLSLILKWQLTSLSTN-VNSWDPC 310
           G+VSPP WL L+   +L  LS N   SW  C
Sbjct: 34  GRVSPPKWLVLV---RLPQLSQNHPRSWQFC 61


>SB_18313| Best HMM Match : Trans_reg_C (HMM E-Value=0.91)
          Length = 567

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 131 ISIMPGVPTTRLLVSRVPKVPGQVSGESYPGPIYDNPSDHD 253
           + + P   T  L+ S +  V GQ+SGE  P P    P  HD
Sbjct: 72  VEVPPQTRTDALVESAIANVRGQLSGEKDPPP----PPTHD 108


>SB_57514| Best HMM Match : EGF_CA (HMM E-Value=2.4e-20)
          Length = 337

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 124 TCFTGIYSRTCRSDTNVIGPRSQKVHVHF 38
           TC +  Y  TC    NV+ P+  K   HF
Sbjct: 246 TCTSQWYGLTCEEGVNVVLPQDPKAKDHF 274


>SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)
          Length = 1844

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 173  SRVPKVPGQVSGESYPGPIYDNPSDHDGLRLITDPSLVSHISRPL 307
            S  P V   V   S   P+  + S  D  R+ T  ++ SH+SRPL
Sbjct: 1235 SSSPDVSSSVGEHSESNPVDTSTSVFD--RISTKENVASHVSRPL 1277


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
 Frame = +2

Query: 62  SGANNVGVGSAGSGIYSGK------AGSLISIMPGVPTTRLLVSRVPKVP 193
           +G NN G  S GS  +SG+       G  IS+ P +P   L +     VP
Sbjct: 634 TGGNNNGGNSGGSNSHSGEVTIQPGGGQTISVNPSIPIQILPIPIQTMVP 683


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,404,494
Number of Sequences: 59808
Number of extensions: 315442
Number of successful extensions: 818
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)