Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H09
         (86 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0088 + 17209568-17209876,17209966-17210595,17210846-172110...    25   8.4  

>03_04_0088 +
           17209568-17209876,17209966-17210595,17210846-17211019,
           17211434-17211515,17212091-17212278,17212993-17213152,
           17213441-17213763,17213860-17213967,17214116-17214189,
           17214249-17214361,17214461-17214741
          Length = 813

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 21  ISHKTVTIRYHCCVSLEC 74
           + HK  T   HCC+ +EC
Sbjct: 374 VVHKLTTESDHCCLVIEC 391


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,673,147
Number of Sequences: 37544
Number of extensions: 9628
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 14,793,348
effective HSP length: 10
effective length of database: 14,417,908
effective search space used: 259522344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)