Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_H08
(625 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 114 5e-26
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 111 4e-25
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 100 2e-21
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 83 1e-16
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 70 1e-12
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 64 5e-11
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 59 3e-09
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 52 3e-07
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 52 3e-07
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 52 4e-07
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 52 4e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 52 4e-07
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 52 4e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 52 4e-07
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 51 7e-07
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 49 3e-06
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 40 0.002
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 40 0.002
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 39 0.002
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 39 0.002
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 39 0.003
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 38 0.004
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 38 0.004
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 37 0.009
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 37 0.013
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 36 0.017
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 36 0.017
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 35 0.038
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 35 0.050
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 33 0.15
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 33 0.15
At5g51300.2 68418.m06360 splicing factor-related contains simila... 33 0.20
At5g51300.1 68418.m06359 splicing factor-related contains simila... 33 0.20
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.20
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 32 0.27
At3g31950.1 68416.m04046 hypothetical protein 32 0.27
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 32 0.36
At5g47430.1 68418.m05844 expressed protein 31 0.47
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 31 0.47
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 31 0.62
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.82
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 30 1.1
At4g19130.1 68417.m02823 replication protein-related similar to ... 30 1.1
At4g17410.1 68417.m02607 expressed protein 30 1.1
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.1
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.1
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 30 1.4
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 1.4
At5g48030.1 68418.m05935 DNAJ heat shock protein, mitochondriall... 29 1.9
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 29 1.9
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 29 1.9
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 29 2.5
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 2.5
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 29 3.3
At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein... 29 3.3
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 29 3.3
At4g06479.1 68417.m00885 hypothetical protein 29 3.3
At2g33090.1 68415.m04057 expressed protein ; expression supporte... 29 3.3
At5g47390.1 68418.m05840 myb family transcription factor contain... 28 4.4
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 28 4.4
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 28 4.4
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 28 4.4
At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family pr... 28 4.4
At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family pr... 28 4.4
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 28 4.4
At4g06526.1 68417.m00938 hypothetical protein 28 5.8
At5g60740.1 68418.m07621 ABC transporter family protein similar ... 27 7.7
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 7.7
At5g21140.1 68418.m02524 expressed protein 27 7.7
At3g57000.1 68416.m06345 nucleolar essential protein-related con... 27 7.7
At2g06904.1 68415.m00778 hypothetical protein 27 7.7
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 114 bits (274), Expect = 5e-26
Identities = 62/171 (36%), Positives = 80/171 (46%), Gaps = 34/171 (19%)
Frame = +3
Query: 132 SVCYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDC------------ 275
S CY C GH +++C GG G +R E C+ C TGHFARDC
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGAT 159
Query: 276 KEEADRCYRCNGTGHIARECAQSP------------DEPSCYNCNKTGHIARNCPE---G 410
K D CY C GH+AR+C Q CY C GH AR+C +
Sbjct: 160 KGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAA 219
Query: 411 GRDNS----NQTCYNCNKSGHISRNCP---DGTKTCYVCGKPGHISRDCDE 542
G S + TCY+C GHI+R+C ++ CY CG GH++RDCD+
Sbjct: 220 GNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQ 270
Score = 112 bits (270), Expect = 2e-25
Identities = 57/164 (34%), Positives = 76/164 (46%), Gaps = 31/164 (18%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEA---------- 287
CY C TGHFAR+CT G G + + C+ C GH ARDC +++
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 288 ----DRCYRCNGTGHIARECAQ----------SPDEPSCYNCNKTGHIARNCPEGGRDNS 425
D CY C GH AR+C Q +CY+C GHIAR+C +
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC--ATKRQP 251
Query: 426 NQTCYNCNKSGHISRNCPD-------GTKTCYVCGKPGHISRDC 536
++ CY C SGH++R+C CY CGK GH +R+C
Sbjct: 252 SRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 109 bits (261), Expect = 2e-24
Identities = 56/139 (40%), Positives = 72/139 (51%), Gaps = 19/139 (13%)
Frame = +3
Query: 117 SKMSSSVCYKCNRTGHFARECTQGGVGARD--SGFNRQREKCFKCNRTGHFARDCKEE-- 284
+K + CY C GH AR+CTQ VG D + C+ C GHFARDC ++
Sbjct: 159 TKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVA 218
Query: 285 ----------ADRCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCPE---GGRD 419
+ CY C G GHIAR+CA + +PS CY C +GH+AR+C + GG
Sbjct: 219 AGNVRSGGGGSGTCYSCGGVGHIARDCA-TKRQPSRGCYQCGGSGHLARDCDQRGSGGGG 277
Query: 420 NSNQTCYNCNKSGHISRNC 476
N N CY C K GH +R C
Sbjct: 278 NDN-ACYKCGKEGHFAREC 295
Score = 61.3 bits (142), Expect = 5e-10
Identities = 37/97 (38%), Positives = 46/97 (47%), Gaps = 30/97 (30%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQ--------------------GGVG--ARDSGFNRQREK-CFKCN 248
CY C GHFAR+CTQ GGVG ARD RQ + C++C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 249 RTGHFARDCKEEA-------DRCYRCNGTGHIARECA 338
+GH ARDC + + CY+C GH AREC+
Sbjct: 260 GSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Score = 52.4 bits (120), Expect = 2e-07
Identities = 23/56 (41%), Positives = 30/56 (53%)
Frame = +3
Query: 120 KMSSSVCYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEA 287
+ S CY+C +GH AR+C Q G SG C+KC + GHFAR+C A
Sbjct: 249 RQPSRGCYQCGGSGHLARDCDQRG-----SGGGGNDNACYKCGKEGHFARECSSVA 299
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
Frame = +3
Query: 414 RDNSNQTCYNCNKSGHISRNC------------PDGTKTCYVCGKPGHISRDCDEERN 551
R CYNC + GHIS++C G + CY CG GH +RDC N
Sbjct: 95 RGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGN 152
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 111 bits (267), Expect = 4e-25
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 35/168 (20%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCK------------- 278
CY C GHFAR+C Q G G G C+ C GH A+DC+
Sbjct: 132 CYMCGDVGHFARDCRQSG-GGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGG 190
Query: 279 --EEADRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGGRDN 422
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG
Sbjct: 191 RGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GG 249
Query: 423 SNQTCYNCNKSGHISRNCP----------DGTKTCYVCGKPGHISRDC 536
+ CY C +GH++R+C G+ C++CGK GH +R+C
Sbjct: 250 GGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 104 bits (250), Expect = 4e-23
Identities = 60/187 (32%), Positives = 80/187 (42%), Gaps = 39/187 (20%)
Frame = +3
Query: 96 LNKLYI*SKMSSSVCYKCNRTGHFARECTQGGVGARDSGFNRQRE----KCFKCNRTGHF 263
LNK S+ S C+ C GH A++C G G G +R +C+ C GHF
Sbjct: 82 LNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHF 141
Query: 264 ARDCKEEAD-----------RCYRCNGTGHIAREC-------------AQSPDEPSCYNC 371
ARDC++ CY C GH+A++C + CY C
Sbjct: 142 ARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMC 201
Query: 372 NKTGHIARNCPEGGRDN---SNQTCYNCNKSGHISRNCPD--------GTKTCYVCGKPG 518
GH AR+C + G N TCY C GHI++ C G + CY CG G
Sbjct: 202 GGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTG 261
Query: 519 HISRDCD 539
H++RDCD
Sbjct: 262 HLARDCD 268
Score = 70.5 bits (165), Expect = 8e-13
Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Frame = +3
Query: 168 ARECTQGGVGARDSGFNRQREK---CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECA 338
A E T G G+ + N R CF C GH A+DC + G G
Sbjct: 71 AIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGR------ 124
Query: 339 QSPDEPSCYNCNKTGHIARNCPEGGRDNS------NQTCYNCNKSGHISRNCPDGT---- 488
+S E CY C GH AR+C + G NS + CY+C + GH++++C G+
Sbjct: 125 RSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNR 184
Query: 489 -----------KTCYVCGKPGHISRDC 536
CY+CG GH +RDC
Sbjct: 185 YGGGGGRGSGGDGCYMCGGVGHFARDC 211
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/50 (48%), Positives = 30/50 (60%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEA 287
CY+C TGH AR+C + G G+ SG KCF C + GHFAR+C A
Sbjct: 254 CYECGGTGHLARDCDRRGSGS--SGGGGGSNKCFICGKEGHFARECTSVA 301
Score = 54.4 bits (125), Expect = 6e-08
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Frame = +3
Query: 132 SVCYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEE--------- 284
S CY C GH A+ CT + + G R C++C TGH ARDC
Sbjct: 224 STCYTCGGVGHIAKVCTSK-IPSGGGGGGRA---CYECGGTGHLARDCDRRGSGSSGGGG 279
Query: 285 -ADRCYRCNGTGHIAREC 335
+++C+ C GH AREC
Sbjct: 280 GSNKCFICGKEGHFAREC 297
Score = 32.3 bits (70), Expect = 0.27
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 129 SSVCYKCNRTGHFARECT 182
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 99.5 bits (237), Expect = 2e-21
Identities = 50/136 (36%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Frame = +3
Query: 132 SVCYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 311
++C C R GHFAR+C+ V C C GH A +C E+ RC+ C
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV-------------CNNCGLPGHIAAECTAES-RCWNCRE 100
Query: 312 TGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-GRDNSNQTCYNCNKSGHISRNCPDGT 488
GH+A C+ +E C++C K+GH AR+C R + C NC K GH++ +C +
Sbjct: 101 PGHVASNCS---NEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTN-D 156
Query: 489 KTCYVCGKPGHISRDC 536
K C C GHI+RDC
Sbjct: 157 KACKNCRTSGHIARDC 172
Score = 88.2 bits (209), Expect = 4e-18
Identities = 44/115 (38%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Frame = +3
Query: 222 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 401
Q C C R GHFARDC C C GHIA EC E C+NC + GH+A NC
Sbjct: 53 QGNLCNNCKRPGHFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNC 108
Query: 402 PEGGRDNSNQTCYNCNKSGHISRNCPDG------TKTCYVCGKPGHISRDCDEER 548
G C++C KSGH +R+C + + C C K GH++ DC ++
Sbjct: 109 SNEG------ICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTNDK 157
Score = 82.2 bits (194), Expect = 3e-16
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 8/149 (5%)
Frame = +3
Query: 126 SSSVCYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 305
+ +C+ C ++GH AR+C+ A D C C + GH A DC + C C
Sbjct: 110 NEGICHSCGKSGHRARDCSNSDSRAGDLRL------CNNCFKQGHLAADCTNDK-ACKNC 162
Query: 306 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG---RDNSNQTCYNCNKSGHISRNC 476
+GHIAR+C ++P C C+ +GH+AR+CP+G D ++ + G +SR
Sbjct: 163 RTSGHIARDCR---NDPVCNICSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGGLSRMS 219
Query: 477 PD--GTKT---CYVCGKPGHISRDCDEER 548
D G C+ CG GH + +C R
Sbjct: 220 RDREGVSAMIICHNCGGRGHRAYECPSAR 248
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/71 (33%), Positives = 37/71 (52%)
Frame = +3
Query: 360 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDCD 539
C NC + GH AR+C ++ C NC GHI+ C ++ C+ C +PGH++ +C
Sbjct: 57 CNNCKRPGHFARDC------SNVSVCNNCGLPGHIAAECTAESR-CWNCREPGHVASNCS 109
Query: 540 EERN*HAPNNS 572
E H+ S
Sbjct: 110 NEGICHSCGKS 120
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 83.0 bits (196), Expect = 1e-16
Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 18/126 (14%)
Frame = +3
Query: 228 EKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKT 380
E CF C+ H A+ C E+++ C +C GH + C + +E S CYNC T
Sbjct: 74 EGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDT 133
Query: 381 GHIARNCPEGGRDNSNQ--TCYNCNKSGHISRNCPDGTK-------TCYVCGKPGHISRD 533
GH +CP D + +C+ C GHIS+NCP+ C VCG H+ +D
Sbjct: 134 GHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKD 193
Query: 534 CDEERN 551
C ++ N
Sbjct: 194 CPDKFN 199
Score = 59.7 bits (138), Expect = 2e-09
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Frame = +3
Query: 201 RDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC-NGTGHIARECAQSPDEPSCYNCNK 377
+D ++++ FK + G DR R + T H R P E C+ C+
Sbjct: 30 KDPNKKKKKKSLFKKKKPG-------SSTDRPQRTGSSTRHPLRVPGMKPGE-GCFICHS 81
Query: 378 TGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGT------KTCYVCGKPGHISRDC 536
HIA+ CPE N+ C C + GH +NCP+ K CY CG GH C
Sbjct: 82 KTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHC 140
Score = 54.0 bits (124), Expect = 8e-08
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Frame = +3
Query: 129 SSVCYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEAD------ 290
+ +C +C R GH + C + + + +++ C+ C TGH C +
Sbjct: 98 NKICLQCRRRGHSLKNCPE------KNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKF 151
Query: 291 -RCYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRDNSNQ 431
C+ C G GHI++ C ++ P C C H+ ++CP+ S Q
Sbjct: 152 ASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPDKFNQESAQ 204
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 70.1 bits (164), Expect = 1e-12
Identities = 52/163 (31%), Positives = 73/163 (44%), Gaps = 25/163 (15%)
Frame = +3
Query: 123 MSSSVCYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADR--- 293
+SS Y + +F T+G A+ C+KC + GH+ARDC ++D
Sbjct: 208 VSSPTSYSVTKNSNFGDSDTRGYQNAKTG------TPCYKCGKEGHWARDCTVQSDTGPV 261
Query: 294 --------CYRCNGTGHIAREC-AQSPD---EPS----------CYNCNKTGHIARNCPE 407
C++C GH +R+C AQS + EP CY C K GH +R+C
Sbjct: 262 KSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCT- 320
Query: 408 GGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 536
G+ ++ Q +SG G CY CGK GH SRDC
Sbjct: 321 -GQSSNQQF-----QSGQAKSTSSTGD--CYKCGKAGHWSRDC 355
Score = 61.7 bits (143), Expect = 4e-10
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Frame = +3
Query: 117 SKMSSSVCYKCNRTGHFARECT-QGGVGARDSGFNRQRE---KCFKCNRTGHFARDCKEE 284
S ++ C+KC + GH++R+CT Q G + G + +C+KC + GH++RDC +
Sbjct: 263 STSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQ 322
Query: 285 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 401
+ +G A+ + + D CY C K GH +R+C
Sbjct: 323 SSNQQFQSGQ---AKSTSSTGD---CYKCGKAGHWSRDC 355
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +3
Query: 117 SKMSSSVCYKCNRTGHFARECT-QGGVGARDSGFNRQREK---CFKCNRTGHFARDCKEE 284
S SS CYKC + GH++R+CT Q SG + C+KC + GH++RDC
Sbjct: 299 SSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSP 358
Query: 285 A 287
A
Sbjct: 359 A 359
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 64.5 bits (150), Expect = 5e-11
Identities = 42/143 (29%), Positives = 54/143 (37%), Gaps = 10/143 (6%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 317
CY C GH + C ++R+ CF C H A+ C + D CY C TG
Sbjct: 168 CYSCGEQGHTSFNCPTP---------TKRRKPCFICGSLEHGAKQCSKGHD-CYICKKTG 217
Query: 318 HIARECAQSPDEPS----CYNCNKTGHIARNC--PEGGRDNSNQTCYNCNKSGHI----S 467
H A++C S C C GH C D + CY C GH+
Sbjct: 218 HRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHLCCVEP 277
Query: 468 RNCPDGTKTCYVCGKPGHISRDC 536
N +CY CG+ GH C
Sbjct: 278 GNSLSWAVSCYRCGQLGHSGLAC 300
Score = 62.9 bits (146), Expect = 2e-10
Identities = 47/171 (27%), Positives = 62/171 (36%), Gaps = 38/171 (22%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADR-------C 296
CY C +TGH A++C C +C GH CK E + C
Sbjct: 210 CYICKKTGHRAKDCPDKYKNGSKGAV------CLRCGDFGHDMILCKYEYSKEDLKDVQC 263
Query: 297 YRCNGTGHIARECAQSPDEP-----SCYNCNKTGHIARNCP---EGGRDNSNQT------ 434
Y C GH+ C P SCY C + GH C E +N + T
Sbjct: 264 YICKSFGHL---CCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFN 320
Query: 435 ------CYNCNKSGHISRNCPDGTKT-----------CYVCGKPGHISRDC 536
CY C + GH +R CP+ + CY C GH +R+C
Sbjct: 321 SREASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFAREC 371
Score = 60.9 bits (141), Expect = 7e-10
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 19/88 (21%)
Frame = +3
Query: 138 CYKCNRTGHFAREC-------TQGGVGARDSGFN-RQREKCFKCNRTGHFARDC------ 275
CY+C + GH C + + FN R+ +C++C GHFAR+C
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSI 346
Query: 276 -----KEEADRCYRCNGTGHIARECAQS 344
+E CYRCNG+GH AREC S
Sbjct: 347 STSHGRESQTLCYRCNGSGHFARECPNS 374
Score = 59.7 bits (138), Expect = 2e-09
Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 7/125 (5%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 317
CY C GH C + G + C++C + GH C + +
Sbjct: 263 CYICKSFGHLC--CVEPGNSLSWA------VSCYRCGQLGHSGLACGRHYEESNENDSA- 313
Query: 318 HIARECAQSPDEPSCYNCNKTGHIARNCPEG-------GRDNSNQTCYNCNKSGHISRNC 476
S + CY C + GH AR CP GR+ S CY CN SGH +R C
Sbjct: 314 -TPERLFNSREASECYRCGEEGHFARECPNSSSISTSHGRE-SQTLCYRCNGSGHFAREC 371
Query: 477 PDGTK 491
P+ ++
Sbjct: 372 PNSSQ 376
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +3
Query: 357 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 536
SCY+C + GH + NCP + + C+ C H ++ C G CY+C K GH ++DC
Sbjct: 167 SCYSCGEQGHTSFNCPTPTK--RRKPCFICGSLEHGAKQCSKG-HDCYICKKTGHRAKDC 223
Query: 537 DEE 545
++
Sbjct: 224 PDK 226
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/77 (32%), Positives = 37/77 (48%)
Frame = +3
Query: 129 SSVCYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCN 308
+S CY+C GHFAREC + G + C++CN +GHFAR+C + R
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCNGSGHFARECPNSSQVSKRDR 382
Query: 309 GTGHIARECAQSPDEPS 359
T + + + E S
Sbjct: 383 ETSTTSHKSRKKNKENS 399
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 126 SSSVCYKCNRTGHFARECTQGG-VGARDSGFNRQREKCFKCNR 251
S ++CY+CN +GHFAREC V RD + K K N+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNK 396
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +3
Query: 477 PD-GTKTCYVCGKPGHISRDC 536
PD G +CY CG+ GH S +C
Sbjct: 161 PDAGWVSCYSCGEQGHTSFNC 181
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 58.8 bits (136), Expect = 3e-09
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Frame = +3
Query: 279 EEADRCYRCNGTGHIARECA-----QSPDEPSCYNCNKTGHIARNCPEGGRDNS-NQTCY 440
+EA+ C RC G GH C + CY CN GH+ C E G S +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 441 NCNKSGHISRNC-----PDGTKTCYVCGKPGHISRDC 536
C + GH C + +C++CG+ GH C
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQC 117
Score = 58.4 bits (135), Expect = 4e-09
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Frame = +3
Query: 222 QREKCFKCNRTGHFARDCKEEAD-------RCYRCNGTGHIARECAQSPDEP-----SCY 365
+ E C +C GH CK E +CY CN GH+ C P SCY
Sbjct: 24 EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHL---CCIEPGHTQSWTVSCY 80
Query: 366 NCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCY 500
C + GH C D+ + +C+ C + GH C + C+
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCF 125
Score = 52.8 bits (121), Expect = 2e-07
Identities = 41/143 (28%), Positives = 56/143 (39%), Gaps = 10/143 (6%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 317
CY+C + GH C G DS CF C R GHF C C+ + +
Sbjct: 79 CYRCGQLGHTGLAC---GRHYDDS----VSPSCFICGREGHFEHQCHNSFSVCFPEDSSE 131
Query: 318 HIARECAQSPDEPSCYNCNKT-----GHIARNCPEGG----RDNSNQTCY-NCNKSGHIS 467
EC Q PD S T GH CP+ ++ S + + + N S +
Sbjct: 132 D---EC-QGPDSSSVRFQENTREEEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKST 187
Query: 468 RNCPDGTKTCYVCGKPGHISRDC 536
+ + CY C GHI+RDC
Sbjct: 188 SKGRETRRLCYECKGKGHIARDC 210
Score = 35.5 bits (78), Expect = 0.029
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Frame = +3
Query: 126 SSSVCYKCN----RTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADR 293
SSSV ++ N GHF +C +R+ E N + +E
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCFQE-ISRE-EGFISLNSSSKSTSKGRETRRL 196
Query: 294 CYRCNGTGHIARECAQS 344
CY C G GHIAR+C S
Sbjct: 197 CYECKGKGHIARDCPNS 213
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 52.0 bits (119), Expect = 3e-07
Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 12/151 (7%)
Frame = +3
Query: 120 KMSSSVCYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADRCY 299
K+S S+ +TG F++ + RD + QR K + AR E+ + +
Sbjct: 189 KISRSLKSLNAKTGLFSKRMK---IIHRDPVLHAQRVAAIKKAKGTPAARKHASESMKAF 245
Query: 300 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQ-TCYNCNKSGHISRNC 476
N R + + C NC + GH CPE G + + C C GH R C
Sbjct: 246 FSNPVNREQRSLSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTC 305
Query: 477 P-------DGTKT----CYVCGKPGHISRDC 536
P G T C +CG+ GH SR C
Sbjct: 306 PKSKSIVTKGISTRYHKCGICGERGHNSRTC 336
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/89 (28%), Positives = 34/89 (38%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 317
C C GH R C + G + + KC C GH +R C++ C+G
Sbjct: 292 CRGCGGKGHNRRTCPKSK-SIVTKGISTRYHKCGICGERGHNSRTCRKPTGVNPSCSGEN 350
Query: 318 HIARECAQSPDEPSCYNCNKTGHIARNCP 404
+ E +C C K GH R CP
Sbjct: 351 --SGEDGVGKITYACGFCKKMGHNVRTCP 377
Score = 40.3 bits (90), Expect = 0.001
Identities = 35/125 (28%), Positives = 45/125 (36%), Gaps = 11/125 (8%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEAD--------- 290
C C + GH C + G A D F +C C GH R C +
Sbjct: 266 CKNCGQEGHRRHYCPELGTNA-DRKF-----RCRGCGGKGHNRRTCPKSKSIVTKGISTR 319
Query: 291 --RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHI 464
+C C GH +R C + P+ N + +G N E G C C K GH
Sbjct: 320 YHKCGICGERGHNSRTCRK----PTGVNPSCSGE---NSGEDGVGKITYACGFCKKMGHN 372
Query: 465 SRNCP 479
R CP
Sbjct: 373 VRTCP 377
Score = 39.5 bits (88), Expect = 0.002
Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Frame = +3
Query: 234 CFKCNRTGHFARDCKE---EADRCYRCNGTG---HIARECAQSPDEPS---------CYN 368
C C + GH C E ADR +RC G G H R C +S + C
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGISTRYHKCGI 325
Query: 369 CNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDCDEER 548
C + GH +R C + N + + N + G + + T C C K GH R C ++
Sbjct: 326 CGERGHNSRTCRKPTGVNPSCSGENSGEDG-VGKI----TYACGFCKKMGHNVRTCPSKQ 380
Score = 33.1 bits (72), Expect = 0.15
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Frame = +3
Query: 435 CYNCNKSGHISRNCPD-GTKT-----CYVCGKPGHISRDCDEERN 551
C NC + GH CP+ GT C CG GH R C + ++
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKS 310
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 52.0 bits (119), Expect = 3e-07
Identities = 31/89 (34%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Frame = +3
Query: 186 GGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADRC------------YRCNGTGHIAR 329
GG G R G R C+KC GH ARDC E Y G G+
Sbjct: 116 GGYGGRGGG-GRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGG 174
Query: 330 ECAQSPDEPSCYNCNKTGHIARNCPEGGR 416
SCY+C ++GH AR+C GGR
Sbjct: 175 GRGGGGGGGSCYSCGESGHFARDCTSGGR 203
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +3
Query: 132 SVCYKCNRTGHFARECTQ--GGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 305
S CYKC GH AR+C++ GG G G+ G R CY C
Sbjct: 129 SDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSC 188
Query: 306 NGTGHIAREC 335
+GH AR+C
Sbjct: 189 GESGHFARDC 198
Score = 44.0 bits (99), Expect = 8e-05
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = +3
Query: 360 CYNCNKTGHIARNCPEGGRDNSNQTC-------YNCNKSGHIS--RNCPDGTKTCYVCGK 512
CY C + GH+AR+C EGG Y G+ R G +CY CG+
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 513 PGHISRDC 536
GH +RDC
Sbjct: 191 SGHFARDC 198
Score = 37.5 bits (83), Expect = 0.007
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGG 191
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 36.7 bits (81), Expect = 0.013
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 483 GTKTCYVCGKPGHISRDCDE 542
G CY CG+PGH++RDC E
Sbjct: 127 GGSDCYKCGEPGHMARDCSE 146
Score = 32.7 bits (71), Expect = 0.20
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 408 GGRDNSNQTCYNCNKSGHISRNCPDG 485
GGR S+ CY C + GH++R+C +G
Sbjct: 124 GGRGGSD--CYKCGEPGHMARDCSEG 147
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 51.6 bits (118), Expect = 4e-07
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Frame = +3
Query: 195 GARDSGFNRQRE---KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 347
G+RD+G +CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 85 GSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 50.4 bits (115), Expect = 9e-07
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Frame = +3
Query: 378 TGHIARNCPEGGRDNSNQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 530
T +R P G RDN ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 75 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 531 DC 536
+C
Sbjct: 135 NC 136
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/44 (45%), Positives = 23/44 (52%)
Frame = +3
Query: 345 PDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC 476
P C+NC GH AR+C G N CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNC 136
Score = 47.6 bits (108), Expect = 7e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3
Query: 291 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 401
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 129 SSVCYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCK 278
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 98 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 137
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 51.6 bits (118), Expect = 4e-07
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Frame = +3
Query: 195 GARDSGFNRQRE---KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 347
G+RD+G +CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 44 GSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 50.4 bits (115), Expect = 9e-07
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Frame = +3
Query: 378 TGHIARNCPEGGRDNSNQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 530
T +R P G RDN ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 34 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 531 DC 536
+C
Sbjct: 94 NC 95
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/44 (45%), Positives = 23/44 (52%)
Frame = +3
Query: 345 PDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC 476
P C+NC GH AR+C G N CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNC 95
Score = 47.6 bits (108), Expect = 7e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3
Query: 291 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 401
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 129 SSVCYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCK 278
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 57 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 96
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 51.6 bits (118), Expect = 4e-07
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 156 TGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCK--EEADRCYRCNGTGHIAR 329
T F+R +G G +CF C GH+ARDC + ++CYRC GHI R
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 330 ECAQSP 347
C SP
Sbjct: 94 NCKNSP 99
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/49 (42%), Positives = 25/49 (51%)
Frame = +3
Query: 345 PDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 491
P C+NC GH AR+C G N CY C + GHI RNC + K
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 100
Score = 48.8 bits (111), Expect = 3e-06
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +3
Query: 285 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 401
A RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 47.2 bits (107), Expect = 9e-06
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Frame = +3
Query: 378 TGHIARNCPEGGRDNSNQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 530
T +R P G RD ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 531 DC 536
+C
Sbjct: 94 NC 95
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 302
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 60 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 104
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGGVGARDSG 212
CY+C GH R C R SG
Sbjct: 82 CYRCGERGHIERNCKNSPKKLRRSG 106
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 51.6 bits (118), Expect = 4e-07
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 156 TGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCK--EEADRCYRCNGTGHIAR 329
T F+R +G G +CF C GH+ARDC + ++CYRC GHI R
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 104
Query: 330 ECAQSP 347
C SP
Sbjct: 105 NCKNSP 110
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/49 (42%), Positives = 25/49 (51%)
Frame = +3
Query: 345 PDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 491
P C+NC GH AR+C G N CY C + GHI RNC + K
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 111
Score = 48.8 bits (111), Expect = 3e-06
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +3
Query: 285 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 401
A RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 106
Score = 47.2 bits (107), Expect = 9e-06
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Frame = +3
Query: 378 TGHIARNCPEGGRDNSNQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 530
T +R P G RD ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 104
Query: 531 DC 536
+C
Sbjct: 105 NC 106
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 302
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 71 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 115
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGGVGARDSG 212
CY+C GH R C R SG
Sbjct: 93 CYRCGERGHIERNCKNSPKKLRRSG 117
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 51.6 bits (118), Expect = 4e-07
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 156 TGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCK--EEADRCYRCNGTGHIAR 329
T F+R +G G +CF C GH+ARDC + ++CYRC GHI R
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 330 ECAQSP 347
C SP
Sbjct: 135 NCKNSP 140
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/49 (42%), Positives = 25/49 (51%)
Frame = +3
Query: 345 PDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 491
P C+NC GH AR+C G N CY C + GHI RNC + K
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 141
Score = 48.8 bits (111), Expect = 3e-06
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +3
Query: 285 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 401
A RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 47.2 bits (107), Expect = 9e-06
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Frame = +3
Query: 378 TGHIARNCPEGGRDNSNQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 530
T +R P G RD ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 531 DC 536
+C
Sbjct: 135 NC 136
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 302
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 101 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 145
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGGVGARDSG 212
CY+C GH R C R SG
Sbjct: 123 CYRCGERGHIERNCKNSPKKLRRSG 147
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 50.8 bits (116), Expect = 7e-07
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +3
Query: 186 GGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--S 359
GG G+ G CFKC GH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 360 CYNCNKTGHIARNCPEGG 413
CY+C ++GH AR+C GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +3
Query: 294 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRN 473
C++C GH+AREC+Q Y+ G + GG +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 474 CPDG 485
C G
Sbjct: 195 CTSG 198
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGGVGARDSGFNRQRE------------KCFKCNRTGHFARDC 275
C+KC GH AREC+QGG G G + C+ C +GHFARDC
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/60 (38%), Positives = 30/60 (50%)
Frame = +3
Query: 357 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 536
SC+ C + GH+AR C +GG S SG G +CY CG+ GH +RDC
Sbjct: 137 SCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGG-GGGGGGGGLSCYSCGESGHFARDC 195
Score = 37.5 bits (83), Expect = 0.007
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGG 191
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 33.5 bits (73), Expect = 0.12
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 483 GTKTCYVCGKPGHISRDCDE 542
G +C+ CG+PGH++R+C +
Sbjct: 134 GDNSCFKCGEPGHMARECSQ 153
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Frame = +3
Query: 348 DEPSCYNCNKTGHIARNCPEGGRDNSNQ-TCYNCNKSGHISRNCPDGTKT-------CYV 503
D +CY C K GH AR+C + + TCY C++ GH S CP+ CY
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYW 91
Query: 504 CGKPGH 521
CG H
Sbjct: 92 CGNQDH 97
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Frame = +3
Query: 294 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRDNSNQT--CYNCNKS 455
CY+C GH AR C P +CY C++ GH + CP D N CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 456 GH 461
H
Sbjct: 96 DH 97
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Frame = +3
Query: 417 DNSNQTCYNCNKSGHISRNCPDGTK------TCYVCGKPGHISRDCDEERN*HA-PNNS* 575
D + CY C K GH +R+C T+ TCY C + GH S C +R P
Sbjct: 30 DYDPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHC 89
Query: 576 YFIINKNKQNN 608
Y+ N++ + N
Sbjct: 90 YWCGNQDHRFN 100
Score = 34.7 bits (76), Expect = 0.050
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 317
CYKC + GHFAR C V + + C+ C+ GH + C + R + N G
Sbjct: 36 CYKCGKLGHFARSCHV--VTQPTTAY----ITCYFCSEEGHRSNGCPNK--RTDQVNPKG 87
Query: 318 H 320
H
Sbjct: 88 H 88
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +3
Query: 138 CYKCNRTGHFAREC-TQGGVGARDS 209
CY+C TGHFAREC +GG G R S
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRS 125
Score = 37.1 bits (82), Expect = 0.009
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 183 QGGVGARDSGFNRQREKCFKCNRTGHFARDCK 278
+GG G G KC++C TGHFAR+C+
Sbjct: 84 RGGGGGGRGGRGGSDLKCYECGETGHFARECR 115
Score = 33.9 bits (74), Expect = 0.088
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 408 GGRDNSNQTCYNCNKSGHISRNC 476
GGR S+ CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 31.1 bits (67), Expect = 0.62
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 291 RCYRCNGTGHIAREC 335
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 360 CYNCNKTGHIARNCPEGG 413
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
Score = 28.3 bits (60), Expect = 4.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 495 CYVCGKPGHISRDC 536
CY CG+ GH +R+C
Sbjct: 101 CYECGETGHFAREC 114
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 39.5 bits (88), Expect = 0.002
Identities = 36/148 (24%), Positives = 51/148 (34%), Gaps = 11/148 (7%)
Frame = +3
Query: 126 SSSVCYKCNRTGHFARECTQGGVGARDSGFNR-QREKCFKCNRTGHFARDCKEEADRCYR 302
+S Y N T E GG A G + +R C++C GH + C +
Sbjct: 444 NSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIKLQNTSH 503
Query: 303 CNGT-GHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTC------YNCNKSGH 461
N T H E P + + Y+ K N D S T N
Sbjct: 504 TNSTLDHQTVEAG--PTQVTSYSLQKKTRDTENNGGSFMDESYATVPISIDVTNGANDAS 561
Query: 462 ISRNCPDGT---KTCYVCGKPGHISRDC 536
++ G + CY CG+ GH+S C
Sbjct: 562 LTSAVSTGKIKKRNCYECGEKGHLSSAC 589
Score = 32.3 bits (70), Expect = 0.27
Identities = 23/105 (21%), Positives = 38/105 (36%)
Frame = +3
Query: 222 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 401
+R C++C GH + C + + + +E Y K +
Sbjct: 393 KRRVCYECGEKGHLSTACPIKLQKADD-QANSKLGQETVDGRPAMQSYGLPKNSGDSYYM 451
Query: 402 PEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 536
E ++N+T YN S + CY CG+ GH+S C
Sbjct: 452 NETYA-STNET-YNGGYSASAVGTGKVKRRNCYECGEKGHLSTAC 494
Score = 31.1 bits (67), Expect = 0.62
Identities = 28/121 (23%), Positives = 42/121 (34%)
Frame = +3
Query: 117 SKMSSSVCYKCNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADRC 296
SK+ VCY+C GH + C A D ++ ++ R + + +
Sbjct: 390 SKVKRRVCYECGEKGHLSTACPIKLQKADDQANSKLGQETVD-GRPAMQSYGLPKNSGDS 448
Query: 297 YRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC 476
Y N T E S TG + R + CY C + GH+S C
Sbjct: 449 YYMNETYASTNETYNGGYSASAVG---TGKVKR-----------RNCYECGEKGHLSTAC 494
Query: 477 P 479
P
Sbjct: 495 P 495
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +3
Query: 432 TCYNCNKSGHISRNCPDGT---KTCYVCGKPGHISRDC 536
TCY+C + HI+ +CP T K+C++C H +R C
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFICASLEHGARQC 181
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 357 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC 476
+CY+C + HI +CP N ++C+ C H +R C
Sbjct: 144 TCYSCGEKDHITVSCPT--LTNCRKSCFICASLEHGARQC 181
Score = 30.7 bits (66), Expect = 0.82
Identities = 19/79 (24%), Positives = 25/79 (31%)
Frame = +3
Query: 300 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCP 479
+ I C + DE N + R E G SN +
Sbjct: 85 KLEAANEIVTHCVERQDED-----NMVEDVVRGEEEDGETTSNSVMTKLLRGARYFDPLD 139
Query: 480 DGTKTCYVCGKPGHISRDC 536
G TCY CG+ HI+ C
Sbjct: 140 AGWVTCYSCGEKDHITVSC 158
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 138 CYKCNRTGHFAREC-TQGGVGARDSGFNRQR 227
CY+C +GHFAREC ++GG G R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 36.3 bits (80), Expect = 0.017
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 186 GGVGARDSGFNRQRE--KCFKCNRTGHFARDCK 278
GG G D G R KC++C +GHFAR+C+
Sbjct: 80 GGRGGGDGGRGRGGSDLKCYECGESGHFARECR 112
Score = 32.7 bits (71), Expect = 0.20
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 411 GRDNSNQTCYNCNKSGHISRNC 476
GR S+ CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 1.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 291 RCYRCNGTGHIAREC 335
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 360 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCP 479
CY C ++GH AR C G + + ++S R P
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
Score = 28.3 bits (60), Expect = 4.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 495 CYVCGKPGHISRDC 536
CY CG+ GH +R+C
Sbjct: 98 CYECGESGHFAREC 111
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
Frame = +3
Query: 189 GVGARDSGFNRQREK---------CFKCNRTGHFARDCKEEADR 293
G RD G++R R + CFKC + GHFAR+C E+ R
Sbjct: 96 GDRGRDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSR 139
Score = 34.7 bits (76), Expect = 0.050
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 405 EGGRDNSNQTCYNCNKSGHISRNCPDGTK---TCYVCGKPGHISRDCDEE 545
+GG N ++ R+ P G + C+ CGKPGH +R+C E
Sbjct: 87 QGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSE 136
Score = 33.1 bits (72), Expect = 0.15
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGGVGARDSG 212
C+KC + GHFAREC +RD G
Sbjct: 120 CFKCGKPGHFARECP--SESSRDGG 142
Score = 32.3 bits (70), Expect = 0.27
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +3
Query: 360 CYNCNKTGHIARNCP-EGGRDNSNQ 431
C+ C K GH AR CP E RD +
Sbjct: 120 CFKCGKPGHFARECPSESSRDGGGR 144
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 183 QGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 335
QGG G RD+ +R R++ + +R+ C++C GH AREC
Sbjct: 87 QGGAG-RDNDGDRGRDRGYDRDRSRPSGG---RGGGDCFKCGKPGHFAREC 133
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 186 GGVGARDSGFNRQREKCFKCNRTGHFARDCKEEAD 290
GG +R G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 32.7 bits (71), Expect = 0.20
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 351 EPSCYNCNKTGHIARNCPEGGRD 419
E C+ C + GH AR+CP G D
Sbjct: 114 EDECFKCRRPGHWARDCPSTGDD 136
Score = 31.9 bits (69), Expect = 0.36
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 120 KMSSSVCYKCNRTGHFARECTQGG 191
K + C+KC R GH+AR+C G
Sbjct: 111 KGTEDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.82
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 255 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 353
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 372 NKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 536
NK + + P+ G ++ +Q K G S C+ C +PGH +RDC
Sbjct: 80 NKVISVNKAEPKVGGEDVDQL----KKGGGYSSRGKGTEDECFKCRRPGHWARDC 130
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 186 GGVGARDSGFNRQREKCFKCNRTGHFARDCKEEAD 290
GG +R G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 32.7 bits (71), Expect = 0.20
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 351 EPSCYNCNKTGHIARNCPEGGRD 419
E C+ C + GH AR+CP G D
Sbjct: 114 EDECFKCRRPGHWARDCPSTGDD 136
Score = 31.9 bits (69), Expect = 0.36
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 120 KMSSSVCYKCNRTGHFARECTQGG 191
K + C+KC R GH+AR+C G
Sbjct: 111 KGTEDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.82
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 255 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 353
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 372 NKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 536
NK + + P+ G ++ +Q K G S C+ C +PGH +RDC
Sbjct: 80 NKVISVNKAEPKVGGEDVDQL----KKGGGYSSRGKGTEDECFKCRRPGHWARDC 130
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 37.1 bits (82), Expect = 0.009
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +3
Query: 222 QREKCFKCNRTGHFARDC 275
Q+EKCF C +TGHFA DC
Sbjct: 261 QQEKCFVCGQTGHFASDC 278
Score = 31.5 bits (68), Expect = 0.47
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 321 IARECAQSP-DEPSCYNCNKTGHIARNCPEGGRDNSN 428
I RE P + C+ C +TGH A +CP G+ SN
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP--GKSGSN 285
Score = 29.5 bits (63), Expect = 1.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 477 PDGTKTCYVCGKPGHISRDC 536
P + C+VCG+ GH + DC
Sbjct: 259 PGQQEKCFVCGQTGHFASDC 278
Score = 27.9 bits (59), Expect = 5.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 138 CYKCNRTGHFAREC 179
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 183 QGGVGARDSGFNRQRE-KCFKCNRTGHFARDC 275
+G G G R E +CFKC R GH+ARDC
Sbjct: 110 KGSFGGGGGGGGRVGEDECFKCGRVGHWARDC 141
Score = 34.7 bits (76), Expect = 0.050
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 120 KMSSSVCYKCNRTGHFARECTQ--GGVGARDSGFN 218
++ C+KC R GH+AR+C GG G GF+
Sbjct: 122 RVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFS 156
Score = 32.3 bits (70), Expect = 0.27
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 351 EPSCYNCNKTGHIARNCPEGG 413
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 180 TQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 335
+ G G RDSG++ + F G + D C++C GH AR+C
Sbjct: 94 SHGSRGGRDSGYSIAGKGSFGGGGGG----GGRVGEDECFKCGRVGHWARDC 141
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 408 GGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 536
GGRD+ + G G C+ CG+ GH +RDC
Sbjct: 99 GGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDC 141
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 408 GGRDNSNQTCYNCNKSGHISRNCP 479
GGR ++ C+ C + GH +R+CP
Sbjct: 120 GGRVGEDE-CFKCGRVGHWARDCP 142
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 183 QGGVGARDSGFNRQREKCFKCNRTGHFARDCK 278
+GG G R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 35.5 bits (78), Expect = 0.029
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 123 MSSSVCYKCNRTGHFARECTQG-GVGARDSGFNRQR 227
+ S CY+C GHFAREC +G G R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 31.1 bits (67), Expect = 0.62
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +3
Query: 201 RDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 335
R +G+ + K R G R E +CY C GH AREC
Sbjct: 60 RKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 1.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 348 DEPSCYNCNKTGHIARNCPEG 410
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 495 CYVCGKPGHISRDCDEER 548
CY CG+ GH +R+C R
Sbjct: 91 CYECGELGHFARECRRGR 108
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 408 GGRDNSNQTCYNCNKSGHISRNCPDG 485
GG ++S CY C + GH +R C G
Sbjct: 84 GGIEDSK--CYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 183 QGGVGARDSGFNRQREKCFKCNRTGHFARDCK 278
+GG G R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 35.5 bits (78), Expect = 0.029
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 123 MSSSVCYKCNRTGHFARECTQG-GVGARDSGFNRQR 227
+ S CY+C GHFAREC +G G R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 31.1 bits (67), Expect = 0.62
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +3
Query: 201 RDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 335
R +G+ + K R G R E +CY C GH AREC
Sbjct: 60 RKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 1.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 348 DEPSCYNCNKTGHIARNCPEG 410
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 495 CYVCGKPGHISRDCDEER 548
CY CG+ GH +R+C R
Sbjct: 91 CYECGELGHFARECRRGR 108
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 408 GGRDNSNQTCYNCNKSGHISRNCPDG 485
GG ++S CY C + GH +R C G
Sbjct: 84 GGIEDSK--CYECGELGHFARECRRG 107
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 35.1 bits (77), Expect = 0.038
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +3
Query: 234 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 404
CF C + GH RDC E D R + +I+ + C C + H A CP
Sbjct: 604 CFYCGKKGHCLRDCLEVTDTELR-DLVQNISVRNGREEASSLCIRCFQLSHWAATCP 659
Score = 34.3 bits (75), Expect = 0.067
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Frame = +3
Query: 198 ARDSGFNRQREKCFKCNRTGHFARDCKEEADR--CYRCNGTGHIARECAQSPDEPSCYNC 371
A S F R+ E +G A + +EE C+ C GH R+C + D
Sbjct: 570 AMASLFARRLEAMKSIMPSGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTD------- 622
Query: 372 NKTGHIARNCP-EGGRDNSNQTCYNCNKSGHISRNCPD 482
+ + +N GR+ ++ C C + H + CP+
Sbjct: 623 TELRDLVQNISVRNGREEASSLCIRCFQLSHWAATCPN 660
Score = 30.7 bits (66), Expect = 0.82
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 378 TGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKT 494
+G +A N E RD C+ C K GH R+C + T T
Sbjct: 588 SGSLAENAEEEQRD---LICFYCGKKGHCLRDCLEVTDT 623
Score = 30.7 bits (66), Expect = 0.82
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 453 SGHISRNCPDGTKT--CYVCGKPGHISRDCDE 542
SG ++ N + + C+ CGK GH RDC E
Sbjct: 588 SGSLAENAEEEQRDLICFYCGKKGHCLRDCLE 619
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 34.7 bits (76), Expect = 0.050
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 7/89 (7%)
Frame = +3
Query: 279 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRDNSNQTCYNCN 449
E ++C C G G + + EP Y N+ + G +D S+ C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 450 KSGHISRNCPD----GTKTCYVCGKPGHI 524
G + CP G C C G +
Sbjct: 256 GKGKLP--CPTCQSRGLIKCQTCDSTGSL 282
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 33.1 bits (72), Expect = 0.15
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 465 SRNCPDGTKTCYVCGKPGHISRDC 536
S D K CY C K GH++RDC
Sbjct: 916 SEETDDAVKICYRCKKVGHLARDC 939
Score = 31.1 bits (67), Expect = 0.62
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 402 PEGGRDNSNQTCYNCNKSGHISRNC 476
P D++ + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.82
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 135 VCYKCNRTGHFAREC 179
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.82
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +3
Query: 234 CFKCNRTGHFARDC--KEEAD 290
C++C + GH ARDC KE +D
Sbjct: 926 CYRCKKVGHLARDCHGKETSD 946
Score = 30.3 bits (65), Expect = 1.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 360 CYNCNKTGHIARNC 401
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 1.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 294 CYRCNGTGHIAREC 335
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 33.1 bits (72), Expect = 0.15
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 234 CFKCNRTGHFARDCKEEA 287
CFKC R GH++RDC A
Sbjct: 8 CFKCGRPGHWSRDCPSSA 25
Score = 31.9 bits (69), Expect = 0.36
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 495 CYVCGKPGHISRDC 536
C+ CG+PGH SRDC
Sbjct: 8 CFKCGRPGHWSRDC 21
Score = 29.1 bits (62), Expect = 2.5
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 138 CYKCNRTGHFAREC 179
C+KC R GH++R+C
Sbjct: 8 CFKCGRPGHWSRDC 21
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = +3
Query: 360 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRN 473
C+ C + GH +R+CP N + + + I N
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45
Score = 27.9 bits (59), Expect = 5.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 435 CYNCNKSGHISRNCP 479
C+ C + GH SR+CP
Sbjct: 8 CFKCGRPGHWSRDCP 22
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 32.7 bits (71), Expect = 0.20
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Frame = +3
Query: 411 GRDNSNQTCYNCNKSGHISRNCPDGTKT------CYVCGKPGHISRDC 536
G + C C + GH CP T T C +CG GH + DC
Sbjct: 355 GTIRDEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 31.1 bits (67), Expect = 0.62
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +3
Query: 348 DEPSCYNCNKTGHIARNCPEGGRD-NSNQTCYNCNKSGHISRNCP 479
DE C C + GH CP S+ C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 32.7 bits (71), Expect = 0.20
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Frame = +3
Query: 411 GRDNSNQTCYNCNKSGHISRNCPDGTKT------CYVCGKPGHISRDC 536
G + C C + GH CP T T C +CG GH + DC
Sbjct: 355 GTIRDEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 31.1 bits (67), Expect = 0.62
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +3
Query: 348 DEPSCYNCNKTGHIARNCPEGGRD-NSNQTCYNCNKSGHISRNCP 479
DE C C + GH CP S+ C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.20
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 291 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 413
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 32.3 bits (70), Expect = 0.27
Identities = 39/157 (24%), Positives = 57/157 (36%), Gaps = 16/157 (10%)
Frame = +3
Query: 129 SSVCYKCNRTGHFARECTQGGVGARDS---GFN-RQREKCFKCNRTGH--FARDCKEEAD 290
S+VC C + GH + C +R+S N R E CN G R EA+
Sbjct: 764 SNVCIHCQQRGHASTNCPSRVPASRNSRPTATNPRNDESTVSCNTCGSQCVLRTANTEAN 823
Query: 291 R---CYRC--NGTGHIARECA---QSPDEPSCYNCNKTGHI-ARNCPEGGRDNSNQTCYN 443
R + C G A E + S + + N +G +R GGR +
Sbjct: 824 RGRQFFSCPTQGCSFFAWEDSINNSSGNATTGSNSGGSGRRGSRGRGRGGRGGQSSGGRR 883
Query: 444 CNKSGHISRNC-PDGTKTCYVCGKPGHISRDCDEERN 551
+ + +S P C+ CG P H + C N
Sbjct: 884 GSGTSFVSATGEPVSGIRCFSCGDPSHFANACPNRNN 920
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 381 GHIARNCPEGGRDNSNQTCYNCNKSGHISRNCP 479
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 32.3 bits (70), Expect = 0.27
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = +3
Query: 300 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC----PEGGRDNSNQTCYNCNKSGHIS 467
R + R+ A +P + C C T H+ +C P ++ CY C GH+S
Sbjct: 268 RATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVS 326
Query: 468 RNCP 479
CP
Sbjct: 327 MYCP 330
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Frame = +3
Query: 225 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 335
+ C C T H DC + +CY C G GH++ C
Sbjct: 284 KRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYC 329
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 31.9 bits (69), Expect = 0.36
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 222 QREKCFKCNRTGHFARDCK 278
Q+E+CF C + GHFA +C+
Sbjct: 260 QQERCFLCGQMGHFASNCE 278
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 321 IARECAQSPDEPS-CYNCNKTGHIARNC 401
I RE +P + C+ C + GH A NC
Sbjct: 250 ILREVVYTPGQQERCFLCGQMGHFASNC 277
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 31.5 bits (68), Expect = 0.47
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +3
Query: 300 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDN 422
R NG G E P C+ CN GH ++CP G N
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNGDPN 230
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 135 VCYKCNRTGHFARECTQGG 191
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 31.5 bits (68), Expect = 0.47
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 492 TCYVCGKPGHISRDCDEER 548
+C++CGK GH + DC ++R
Sbjct: 727 SCFICGKSGHRATDCPDKR 745
Score = 30.7 bits (66), Expect = 0.82
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 414 RDNSNQTCYNCNKSGHISRNCPD 482
R++ +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 357 SCYNCNKTGHIARNCPE 407
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 31.1 bits (67), Expect = 0.62
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +3
Query: 360 CYNCNKTGHIARNC-------PEGGRDNSNQTCYNCNKSGHISRNCPDG 485
C+NC H+ARNC P+ + + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 30.7 bits (66), Expect = 0.82
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 432 TCYNCNKSGHISRNCPDGTKTCYV 503
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 351 EPSCYNCNKTGHIARNCP 404
E +CY C + GHIA+ CP
Sbjct: 224 ELTCYRCKQEGHIAKICP 241
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 279 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 413
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 366 NCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 491
+ +++G + GG S C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGGATTS---CNVCGNSGHVSAKCPGATK 430
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 441 NCNKSGHISRNCPDG--TKTCYVCGKPGHISRDC 536
+ ++SG + G T +C VCG GH+S C
Sbjct: 392 HAHQSGQSGNHYSGGGATTSCNVCGNSGHVSAKC 425
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 1.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 135 VCYKCNRTGHFARECTQGG 191
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +3
Query: 300 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDN 422
R G G E P C+ CN +GH ++C G N
Sbjct: 102 RMGGRG-FGMERTTPPPGYVCHRCNVSGHFIQHCSTNGNPN 141
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 279 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 416
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +3
Query: 231 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 365
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 279 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 416
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +3
Query: 231 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 365
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 423 SNQTCYNCNKSGHISRNCPDGTKT 494
S+ C++C++ GH ++NCP T T
Sbjct: 2 SSGDCFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 2.5
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 360 CYNCNKTGHIARNCP 404
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 123 MSSSVCYKCNRTGHFAREC 179
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 1.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 276 KEEADRCYRCNGTGHIARECAQSP 347
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 234 CFKCNRTGHFARDC 275
CFKC T H A+DC
Sbjct: 342 CFKCGSTDHIAKDC 355
Score = 27.5 bits (58), Expect = 7.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQG 188
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At5g48030.1 68418.m05935 DNAJ heat shock protein, mitochondrially
targeted (GFA2) 99.8% identical to mitochondrially
targeted DnaJ protein GFA2 [Arabidopsis thaliana]
GI:21429604; contains Pfam profiles PF00226: DnaJ
domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
central domain (4 repeats)
Length = 456
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = +3
Query: 147 CNRTGHFARECTQGGVGARDSGFNRQREKCFKCNRTG--HFARDCKEEADRCYRCNGTG 317
C++T F E G + +REKC CN +G R C +C G G
Sbjct: 226 CSKTVTFQTEMACNTCGGQGVPPGTKREKCKACNGSGMTSLRRGMLSIQTTCQKCGGAG 284
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 288 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEG-GRDNSNQTCYNCNKSGH 461
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 462 ISRNC 476
IS+ C
Sbjct: 282 ISKPC 286
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 321 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRN 473
++R+ ++S E +C+ C + GH +CP + + Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 495 CYVCGKPGHISRDCDEERN*HAPNNS*Y 578
C++CG+ GH DC RN P Y
Sbjct: 161 CWICGEDGHYKNDC-PSRNSEKPKEHAY 187
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 11/52 (21%)
Frame = +3
Query: 354 PSCYNCNKTGHIARNCPEGGRDNSN-----------QTCYNCNKSGHISRNC 476
P C++C GHI C R+ + CY+ GHI RNC
Sbjct: 626 PVCHHCGVVGHIRPRCFRLLREKNRLMNAYDVRFHGPKCYHYGVQGHIKRNC 677
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 132 SVCYKCNRTGHFARECTQGGVGARD 206
S CY+C GH + EC + +G R+
Sbjct: 152 SRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 4.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 279 EEADRCYRCNGTGHIARECAQS 344
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 4.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 348 DEPSCYNCNKTGHIARNCPE 407
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 441 NCNKSGHISRNCPDGTKTCYVCGKPGHISRDCDEER 548
N S I + CY CG GH+S +C + +
Sbjct: 136 NGRASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQ 171
Score = 27.5 bits (58), Expect = 7.7
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 435 CYNCNKSGHISRNCP 479
CY C GH+S CP
Sbjct: 154 CYECGDEGHLSYECP 168
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 213 FNRQREKCFKCNRTGHFARDCKEEADR 293
F + KCF C + GH A DC+ + R
Sbjct: 259 FPGEEGKCFLCGQEGHRAADCEGKIKR 285
>At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 415
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Frame = +3
Query: 294 CYRCNGTGHIAREC---AQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNC 446
C+RC GH +C + + D P C G R+N + Y C
Sbjct: 11 CFRCRQAGHWINDCPLKSYTDDPPPAIQCPCGGGFCEIKVANTRENPGRKFYKC 64
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 312 CHYICSNGQPPPCSRAQSARCGC 244
C IC +G+ PPC +C C
Sbjct: 255 CREICHDGECPPCRERAVYKCSC 277
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Frame = +3
Query: 294 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNC 401
C C+ T H EC P D CY C GH++ C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
>At2g33090.1 68415.m04057 expressed protein ; expression supported
by MPSS
Length = 248
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 420 NSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH-ISRD 533
N Y C K+ H++ N P+ K C K H ISRD
Sbjct: 18 NGRGDAYTCKKALHLTLNKPNVVKACSDLKKNEHQISRD 56
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 28.3 bits (60), Expect = 4.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 435 CYNCNKSGHISRNCPD 482
C +CN +GH SR CP+
Sbjct: 5 CSHCNHNGHNSRTCPN 20
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 360 CYNCNKTGHIARNCPEGG 413
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 435 CYNCNKSGHISRNCPD-GTKTCYVCGKPG 518
C +C+ +GH SR CP G TC G G
Sbjct: 5 CSHCSNNGHNSRTCPTRGGGTCGGSGGGG 33
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +3
Query: 276 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKS 455
+E C+ CNGTG AQ C C +G++ G ++ SN C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVELGGGEKEVSN--CINCDGA 127
Query: 456 GHIS 467
G ++
Sbjct: 128 GSLT 131
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 267 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYN 443
RDC+ A RCY G AR C + PS N + I E G ++ ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180
Query: 444 CNKS 455
C S
Sbjct: 181 CKSS 184
>At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/83 (24%), Positives = 33/83 (39%)
Frame = +3
Query: 180 TQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS 359
+ GG G D+ + K F + +DC+EE D+ + + S +PS
Sbjct: 154 SSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCEEEEDKKQKDEQSPTSNANKTNSEKQPS 213
Query: 360 CYNCNKTGHIARNCPEGGRDNSN 428
+ K G+I G NS+
Sbjct: 214 --DSLKDGYIHMRARRGQATNSH 234
>At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/83 (24%), Positives = 33/83 (39%)
Frame = +3
Query: 180 TQGGVGARDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS 359
+ GG G D+ + K F + +DC+EE D+ + + S +PS
Sbjct: 154 SSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCEEEEDKKQKDEQSPTSNANKTNSEKQPS 213
Query: 360 CYNCNKTGHIARNCPEGGRDNSN 428
+ K G+I G NS+
Sbjct: 214 --DSLKDGYIHMRARRGQATNSH 234
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Frame = +3
Query: 153 RTGHFARECTQGGVGARDSGFNRQREKCFKCNRTGHFARD---------CKEEADRCYRC 305
R+ + C + G + + ++E C K + A + C EE +R C
Sbjct: 778 RSNKDKQSCDKKGAKNKTRAEDDKQENCHKLSENNKTASEMLVSGTKVSCHEENNRVMNC 837
Query: 306 NGTGHIARECA 338
NG G +A E A
Sbjct: 838 NGRGSVAGEMA 848
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = +3
Query: 294 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 404
C C+ T H +EC P D C C GH++ CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325
>At5g60740.1 68418.m07621 ABC transporter family protein similar to
ATP-binding cassette, sub-family G, member 2
(Placenta-specific ATP- binding cassette transporter)
(Breast cancer resistance protein) SP:Q9UNQ0 from [Homo
sapiens]
Length = 1061
Score = 27.5 bits (58), Expect = 7.7
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = -2
Query: 336 RTHALCAPCHYICSNGQP-PPCSRAQS-ARCGCT*STSPAAG*SQSRGRLRHLACTRGRS 163
RT LC P HY +GQP C A A G + +AG S + L CT+G
Sbjct: 208 RTTGLCDPYHYQLPSGQPNHTCGGADIWADIGSSSEVFCSAG-SFCPSTIDKLPCTKGHY 266
Query: 162 APSCCTCSIRLNSFSI 115
+ T LN F +
Sbjct: 267 CRTGSTA--ELNCFKL 280
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Frame = +3
Query: 303 CNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 404
C H +C P D CY+C GH++ CP
Sbjct: 339 CGYIDHPTEQCLHPPQAMPYMVDCAKCYSCGGVGHVSMYCP 379
>At5g21140.1 68418.m02524 expressed protein
Length = 312
Score = 27.5 bits (58), Expect = 7.7
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +3
Query: 327 RECAQSPDEPSCYNCNKTGHIARNCP-EGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYV 503
R ++ D PSC CN+ G A CP EG ++ C S K C
Sbjct: 187 RSWFRNNDVPSCEVCNEAGVKADLCPTEGCPVRIHKYCLKKLLSQR-------DDKRCSG 239
Query: 504 CGKPGHISRDCDEERN*HAPNN 569
CGKP +S+ E A N+
Sbjct: 240 CGKPWPLSKITKTEAAEEAMND 261
>At3g57000.1 68416.m06345 nucleolar essential protein-related
contains weak similarity to Nucleolar essential protein
1 (Essential for mitotic growth 1) (Swiss-Prot:Q06287)
[Saccharomyces cerevisiae]
Length = 298
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 384 HIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDCD 539
H+ N G +S++ N K H++ C D T +V G H DC+
Sbjct: 216 HLPVNSHRIGFSHSSEKLVNMQK--HLATVCDDDRDTVFVVGAMAHGKIDCN 265
>At2g06904.1 68415.m00778 hypothetical protein
Length = 217
Score = 27.5 bits (58), Expect = 7.7
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +3
Query: 495 CYVCGKPGHISRDC 536
C++CG+ GH +DC
Sbjct: 177 CFICGEDGHYPQDC 190
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,767,525
Number of Sequences: 28952
Number of extensions: 214687
Number of successful extensions: 1302
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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