Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_H07
(596 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 94 6e-20
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 92 3e-19
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 91 4e-19
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 91 4e-19
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 80 1e-15
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 79 2e-15
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 77 1e-14
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 77 1e-14
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 77 1e-14
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 77 1e-14
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 74 8e-14
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 74 8e-14
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 65 3e-11
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 54 5e-08
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 54 7e-08
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 52 3e-07
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 52 3e-07
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 52 4e-07
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 52 4e-07
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 50 9e-07
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 49 2e-06
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 49 2e-06
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 49 3e-06
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 49 3e-06
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 48 6e-06
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 47 8e-06
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 47 1e-05
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 46 2e-05
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 46 2e-05
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 46 2e-05
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 45 3e-05
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 45 3e-05
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 45 4e-05
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 45 4e-05
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 45 4e-05
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 45 4e-05
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 44 1e-04
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 44 1e-04
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 43 1e-04
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 43 1e-04
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 43 2e-04
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 43 2e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 43 2e-04
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 42 4e-04
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 42 4e-04
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 41 5e-04
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 41 5e-04
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 41 5e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 41 5e-04
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 41 7e-04
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 41 7e-04
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 41 7e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 40 0.001
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 40 0.001
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 40 0.001
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 40 0.001
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 40 0.002
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 40 0.002
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 40 0.002
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 40 0.002
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 40 0.002
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 40 0.002
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 40 0.002
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 39 0.002
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 39 0.002
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 39 0.002
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 39 0.002
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 39 0.002
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 39 0.003
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 39 0.003
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 39 0.003
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 39 0.003
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 39 0.003
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 38 0.004
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 38 0.004
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 38 0.004
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 38 0.004
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 38 0.005
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 38 0.007
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 38 0.007
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 38 0.007
At2g47310.1 68415.m05906 flowering time control protein-related ... 38 0.007
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 38 0.007
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 38 0.007
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 38 0.007
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 38 0.007
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 37 0.009
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 37 0.009
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 37 0.009
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 37 0.009
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 37 0.012
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 37 0.012
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 36 0.016
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 36 0.016
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 36 0.016
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 36 0.021
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 36 0.021
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 36 0.021
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 36 0.021
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 36 0.021
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 36 0.021
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 36 0.021
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 36 0.021
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 36 0.021
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 36 0.027
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 35 0.047
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 35 0.047
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 35 0.047
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s... 35 0.047
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 34 0.063
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 34 0.063
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 34 0.063
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 34 0.083
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 34 0.083
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 34 0.083
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 34 0.083
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 34 0.083
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 33 0.14
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 33 0.14
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 33 0.14
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 33 0.14
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 33 0.14
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 33 0.14
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 33 0.19
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 33 0.19
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 33 0.19
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 32 0.25
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 32 0.25
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 32 0.25
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 32 0.25
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 32 0.25
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 32 0.25
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 32 0.33
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 32 0.33
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 32 0.33
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 32 0.33
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 32 0.33
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 32 0.33
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 32 0.33
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 31 0.44
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 31 0.44
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 31 0.44
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 31 0.44
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 31 0.58
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 31 0.58
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 31 0.58
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 31 0.58
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 31 0.77
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 31 0.77
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 31 0.77
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 31 0.77
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 31 0.77
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 31 0.77
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 31 0.77
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 30 1.0
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 30 1.0
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 30 1.0
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 30 1.3
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 30 1.3
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 25 1.6
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 29 1.8
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 29 1.8
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 29 1.8
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 29 1.8
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 29 1.8
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 29 1.8
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 29 2.4
At4g01290.1 68417.m00170 expressed protein 29 2.4
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 29 2.4
At1g72620.1 68414.m08397 hydrolase, alpha/beta fold family prote... 29 2.4
At1g13450.1 68414.m01572 DNA binding protein GT-1 identical to D... 29 2.4
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 29 2.4
At5g24440.1 68418.m02880 RNA-binding protein, putative 29 3.1
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 29 3.1
At4g38180.1 68417.m05390 far-red impaired responsive protein, pu... 29 3.1
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 29 3.1
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 29 3.1
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 29 3.1
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 29 3.1
At5g33200.1 68418.m03919 hypothetical protein predicted replicat... 28 4.1
At2g33440.1 68415.m04099 splicing factor family protein similar ... 28 4.1
At2g06904.1 68415.m00778 hypothetical protein 28 4.1
At5g37510.2 68418.m04518 NADH-ubiquinone dehydrogenase, mitochon... 28 5.4
At5g37510.1 68418.m04517 NADH-ubiquinone dehydrogenase, mitochon... 28 5.4
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 28 5.4
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 28 5.4
At5g53180.1 68418.m06611 polypyrimidine tract-binding protein, p... 27 7.2
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 27 7.2
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 27 7.2
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 27 7.2
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 27 9.5
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 27 9.5
At3g01150.1 68416.m00019 polypyrimidine tract-binding protein, p... 27 9.5
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 94.3 bits (224), Expect = 6e-20
Identities = 48/116 (41%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 407
++YVG+L ++ ELED F +G +R+VWVAR PPG+AF++FEDPRDA DAIR LDG+
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGKN 62
Query: 408 ICGRRARVEMSNXXXXXXXXXXXXXXXXXXXX------XXXXCYDCGDRGHYARDC 557
RVE S+ CY+CG+ GH+AR+C
Sbjct: 63 ----GWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFAREC 114
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 91.9 bits (218), Expect = 3e-19
Identities = 46/113 (40%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 407
++YVG+L ++ ELED F +G +R+VWVAR PPG+AF++FED RDA DAIR +DG+
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGK- 61
Query: 408 ICGRRARVEMSN---XXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYARDC 557
RVE S+ CY+CG+ GH+AR+C
Sbjct: 62 ---NGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFAREC 111
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 91.5 bits (217), Expect = 4e-19
Identities = 47/110 (42%), Positives = 63/110 (57%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 407
++YVG+L ++ ELED F +G LRNVWVAR PPG+AF+EF+D RDA DAI LD +
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK- 61
Query: 408 ICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYARDC 557
RVE+S+ CY+CG+ GH+AR+C
Sbjct: 62 ---NGWRVELSH----KDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 91.5 bits (217), Expect = 4e-19
Identities = 47/110 (42%), Positives = 63/110 (57%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 407
++YVG+L ++ ELED F +G LRNVWVAR PPG+AF+EF+D RDA DAI LD +
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK- 61
Query: 408 ICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYARDC 557
RVE+S+ CY+CG+ GH+AR+C
Sbjct: 62 ---NGWRVELSH----KDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 79.8 bits (188), Expect = 1e-15
Identities = 46/116 (39%), Positives = 61/116 (52%)
Frame = +3
Query: 213 RYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRG 392
RYG+ ++YVG L + +LE FS YG +R+V + R+ +AFVEF DPRDA+DA
Sbjct: 7 RYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDPRDADDARHY 63
Query: 393 LDGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYARDCS 560
LDGR G R VE S C++CG GH+ARDC+
Sbjct: 64 LDGRDFDGSRITVEFSR----GAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCT 115
Score = 29.5 bits (63), Expect = 1.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
CY CG+RGH R+C
Sbjct: 123 CYRCGERGHIERNC 136
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 79.4 bits (187), Expect = 2e-15
Identities = 46/116 (39%), Positives = 61/116 (52%)
Frame = +3
Query: 213 RYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRG 392
RYG+ ++YVG L + +LE FS YG +R+V + R+ +AFVEF DPRDA+DA
Sbjct: 7 RYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPRDADDARYY 63
Query: 393 LDGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYARDCS 560
LDGR G R VE S C++CG GH+ARDC+
Sbjct: 64 LDGRDFDGSRITVEASR----GAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCT 115
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 76.6 bits (180), Expect = 1e-14
Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Frame = +3
Query: 207 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNV--WVARNPPGFAFVEFEDPRDAED 380
MS + IYVG+L + K E+ED F YGP+ ++ + PPG+AFVEFEDPRDA+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 381 AIRGLDGRTICGRRARVEMSN 443
AI G DG G R RVE+++
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAH 81
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 76.6 bits (180), Expect = 1e-14
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = +3
Query: 207 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNV--WVARNPPGFAFVEFEDPRDAED 380
MS +YVG+L + + E+ED FS YGP+ + V PPG+AFVEF+D RDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 381 AIRGLDGRTICGRRARVEMSN 443
AI G DG G R RVE+++
Sbjct: 61 AIHGRDGYDFDGHRLRVELAH 81
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 76.6 bits (180), Expect = 1e-14
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = +3
Query: 207 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNV--WVARNPPGFAFVEFEDPRDAED 380
MS +YVG+L + + E+ED FS YGP+ + V PPG+AFVEF+D RDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 381 AIRGLDGRTICGRRARVEMSN 443
AI G DG G R RVE+++
Sbjct: 61 AIHGRDGYDFDGHRLRVELAH 81
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 76.6 bits (180), Expect = 1e-14
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = +3
Query: 207 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNV--WVARNPPGFAFVEFEDPRDAED 380
MS +YVG+L + + E+ED FS YGP+ + V PPG+AFVEF+D RDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 381 AIRGLDGRTICGRRARVEMSN 443
AI G DG G R RVE+++
Sbjct: 61 AIHGRDGYDFDGHRLRVELAH 81
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 73.7 bits (173), Expect = 8e-14
Identities = 38/81 (46%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Frame = +3
Query: 207 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNV--WVARNPPGFAFVEFEDPRDAED 380
MS IYVG+L + + E+ED FS YGP+ + + PPG+AFVEFED RDA+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 381 AIRGLDGRTICGRRARVEMSN 443
AI G DG G RVE+++
Sbjct: 61 AIYGRDGYDFDGHHLRVELAH 81
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 73.7 bits (173), Expect = 8e-14
Identities = 38/81 (46%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Frame = +3
Query: 207 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNV--WVARNPPGFAFVEFEDPRDAED 380
MS IYVG+L + + E+ED FS YGP+ + + PPG+AFVEFED RDA+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 381 AIRGLDGRTICGRRARVEMSN 443
AI G DG G RVE+++
Sbjct: 61 AIYGRDGYDFDGHHLRVELAH 81
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 65.3 bits (152), Expect = 3e-11
Identities = 34/73 (46%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVW--VARNPPGFAFVEFEDPRDAEDAIRGLDGR 404
IYVG+L + + E+ED F YG + ++ V PP + FVEFE RDAEDAI+G DG
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 405 TICGRRARVEMSN 443
+ G R RVE+++
Sbjct: 69 NLDGCRLRVELAH 81
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 54.4 bits (125), Expect = 5e-08
Identities = 30/74 (40%), Positives = 36/74 (48%)
Frame = +3
Query: 339 FAFVEFEDPRDAEDAIRGLDGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXC 518
+AFVEF DPRDA+DA LDGR G R VE S C
Sbjct: 5 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSR----GAPRGSRDFDSRGPPPGAGRC 60
Query: 519 YDCGDRGHYARDCS 560
++CG GH+ARDC+
Sbjct: 61 FNCGVDGHWARDCT 74
Score = 29.5 bits (63), Expect = 1.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
CY CG+RGH R+C
Sbjct: 82 CYRCGERGHIERNC 95
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 54.0 bits (124), Expect = 7e-08
Identities = 30/74 (40%), Positives = 36/74 (48%)
Frame = +3
Query: 339 FAFVEFEDPRDAEDAIRGLDGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXC 518
+AFVEF DPRDA+DA LDGR G R VE S C
Sbjct: 5 YAFVEFSDPRDADDARYYLDGRDFDGSRITVEASR----GAPRGSRDNGSRGPPPGSGRC 60
Query: 519 YDCGDRGHYARDCS 560
++CG GH+ARDC+
Sbjct: 61 FNCGVDGHWARDCT 74
Score = 29.5 bits (63), Expect = 1.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
CY CG+RGH R+C
Sbjct: 82 CYRCGERGHIERNC 95
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 52.0 bits (119), Expect = 3e-07
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Frame = +3
Query: 222 DCKIYVGDLGNNASKPELEDAFSYYGPLRN--VWVARN---PPGFAFVEFEDPRDAEDAI 386
+ +I+VG L + ++ +LE F YG + + V R+ P GF F+ F D R A+DAI
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 387 RGLDGRTICGRRARVEMSN---XXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYARDC 557
+ + GR + + V + C+ C GH+ARDC
Sbjct: 71 KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 52.0 bits (119), Expect = 3e-07
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Frame = +3
Query: 222 DCKIYVGDLGNNASKPELEDAFSYYGPLRN--VWVARN---PPGFAFVEFEDPRDAEDAI 386
+ +I+VG L + ++ +LE F YG + + V R+ P GF F+ F D R A+DAI
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 387 RGLDGRTICGRRARVEMSN---XXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYARDC 557
+ + GR + + V + C+ C GH+ARDC
Sbjct: 71 KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 51.6 bits (118), Expect = 4e-07
Identities = 34/72 (47%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLD---- 398
++ G+ +A + +LE F YG + V + GFAFV ED RDAEDAIR LD
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEY 60
Query: 399 GRTICGRRARVE 434
GRT GRR RVE
Sbjct: 61 GRT--GRRLRVE 70
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 51.6 bits (118), Expect = 4e-07
Identities = 34/72 (47%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLD---- 398
++ G+ +A + +LE F YG + V + GFAFV ED RDAEDAIR LD
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEY 60
Query: 399 GRTICGRRARVE 434
GRT GRR RVE
Sbjct: 61 GRT--GRRLRVE 70
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 50.4 bits (115), Expect = 9e-07
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Frame = +3
Query: 201 GIMSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDP 365
G SR + V +L ++ + +L +F +GP++++++ R+ P GF FV+F DP
Sbjct: 28 GGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDP 87
Query: 366 RDAEDAIRGLDGRTICGRRARV 431
DA DA +DG + GR V
Sbjct: 88 ADAADAKHHMDGYLLLGRELTV 109
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Frame = +3
Query: 270 ELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVE 434
EL + F +GP+R+V++ R+ P GFAFVEF D DA +A R ++ R+ GR V
Sbjct: 62 ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121
Query: 435 MSN 443
+++
Sbjct: 122 VAS 124
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 410
+YVG+ + +LE FS +G ++ V + G+AFV FED RDAEDAIR D T
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKS---GYAFVYFEDERDAEDAIRRTDNTTF 60
Query: 411 -CGRR 422
GRR
Sbjct: 61 GYGRR 65
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 270 ELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVE 434
++E F YG + NV + RN FAFV+F DA A+ + + VE
Sbjct: 111 DMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVE 162
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 48.8 bits (111), Expect = 3e-06
Identities = 33/72 (45%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLD---- 398
++ G+ +A + +LE F YG + V + GFAFV ED RDAEDAIR LD
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEF 60
Query: 399 GRTICGRRARVE 434
GR GRR RVE
Sbjct: 61 GRK--GRRLRVE 70
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 392
++YVG+L + L +AFS YG + + V R+ GF FV + +AE A+ G
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 393 LDGRTICGRRARVEM 437
+DG+ + GRR V++
Sbjct: 64 MDGKELNGRRVSVKL 78
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 47.6 bits (108), Expect = 6e-06
Identities = 27/70 (38%), Positives = 32/70 (45%)
Frame = +3
Query: 351 EFEDPRDAEDAIRGLDGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCG 530
EF DPRDA+DA LDGR G R VE S C++CG
Sbjct: 20 EFGDPRDADDARHYLDGRDFDGSRITVEFSR----GAPRGSRDFDSRGPPPGAGRCFNCG 75
Query: 531 DRGHYARDCS 560
GH+ARDC+
Sbjct: 76 VDGHWARDCT 85
Score = 29.5 bits (63), Expect = 1.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
CY CG+RGH R+C
Sbjct: 93 CYRCGERGHIERNC 106
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 47.2 bits (107), Expect = 8e-06
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Frame = +3
Query: 207 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP----GFAFVEFEDPRDA 374
+ + + +YVGDL + ++ L D F+ P+ N+ V R+ G+A+V F +P DA
Sbjct: 39 LQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDA 98
Query: 375 EDAIRGLDGRTICGRRARVEMSN 443
A+ L+ I R R+ +SN
Sbjct: 99 SRAMESLNYAPIRDRPIRIMLSN 121
Score = 31.9 bits (69), Expect = 0.33
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG----FAFVEFEDPRDAEDAIRGLD 398
+YV +L + EL+ F YG + + V ++ G F FV F P A A+ ++
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 399 G 401
G
Sbjct: 287 G 287
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGL 395
+ V +L ++ + +L F +GP++++++ R+ P GF F++F DP DA +A +
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQM 98
Query: 396 DGRTICGRRARV 431
DG + GR V
Sbjct: 99 DGYLLLGRELTV 110
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/67 (32%), Positives = 39/67 (58%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 410
++V +L ++ S EL FS YG +R V + ++EF D R A+ A++GL+G +
Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQGLNGLEV 356
Query: 411 CGRRARV 431
GR+ ++
Sbjct: 357 AGRQLKL 363
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGL 395
++V L +S+ +++ F YGP++ V + + P G+AF+E+ RD + A +
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 396 DGRTICGRRARVEM 437
DG+ I GRR V++
Sbjct: 200 DGQKIDGRRVLVDV 213
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 46.0 bits (104), Expect = 2e-05
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 5/114 (4%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAIRGL 395
+YV +L + + ++ FS +G + V V R G AFV + DA A R +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 396 DGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYARDC 557
D + + GR+ V ++ CY+CGD GH + +C
Sbjct: 119 DAKILNGRKLTVSIA-----ADNGRASEFIKKRVYKDKSRCYECGDEGHLSYEC 167
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 45.2 bits (102), Expect = 3e-05
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVA--RNPPG--FAFVEFEDPRDAEDAIRGLD 398
+YVG L + ++ + FS YG + V + R+ G + FV F + R A+DAI +D
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68
Query: 399 GRTICGRRARV 431
G++I GR RV
Sbjct: 69 GKSIGGRAVRV 79
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 45.2 bits (102), Expect = 3e-05
Identities = 25/56 (44%), Positives = 33/56 (58%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLD 398
++VG+ + +LE F YG + V + G+AFV FED RDAEDAIR LD
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKS---GYAFVYFEDERDAEDAIRKLD 56
Score = 34.3 bits (75), Expect = 0.063
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +3
Query: 270 ELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVE 434
++E F YG + NV + RN F+FV+FE DA A+ I R VE
Sbjct: 109 DIEKHFEPYGKVTNVRIRRN---FSFVQFETQEDATKALEATQRSKILDRVVSVE 160
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Frame = +3
Query: 219 GDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDA 383
G + + +L +A +L D+F +GPL+++++ RN P GF FV++ DA +A
Sbjct: 45 GPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEA 104
Query: 384 IRGLDGRTICGRRARV 431
++ ++ + I GR +
Sbjct: 105 MKRMNHKVIGGREIAI 120
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 44.8 bits (101), Expect = 4e-05
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 410
+ V +L + S +LE+ F YG ++ + N FVEF D R A+ A++ L+ I
Sbjct: 224 LVVFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNRTEI 283
Query: 411 CGRRARVEMS 440
G+R ++E S
Sbjct: 284 AGKRIKLEHS 293
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 44.8 bits (101), Expect = 4e-05
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 392
K+++G L + + L+DAFS +G + V +A + GF FV+F + DA A
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 393 LDGRTICGRRARVEMS 440
+DG+ + GR R+ +
Sbjct: 102 MDGKGLLGRPLRISFA 117
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 44.8 bits (101), Expect = 4e-05
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNV-----WVARNPPGFAFVEFEDPRDAEDAIRG 392
K+YV L ++ L D F +G L ++ VA P GFAF+ +E +A AI+G
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 393 LDGRTICGRRARVE 434
+ G+ + GR VE
Sbjct: 138 MHGKFLDGRVIFVE 151
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Frame = +3
Query: 213 RYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAE 377
RY K++VG L L+ AF+ +G + V + GF FV F A
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90
Query: 378 DAIRGLDGRTICGRRARVEMS 440
+AI+ +DG+ + GR+ RV ++
Sbjct: 91 NAIKEMDGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Frame = +3
Query: 213 RYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAE 377
RY K++VG L L+ AF+ +G + V + GF FV F A
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90
Query: 378 DAIRGLDGRTICGRRARVEMS 440
+AI+ +DG+ + GR+ RV ++
Sbjct: 91 NAIKEMDGKELNGRQIRVNLA 111
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 43.2 bits (97), Expect = 1e-04
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPL--RNVWVARNPP---GFAFVEFEDPRDAEDAIRG 392
K+++G L L DAF+++G + V V R GF FV F D A AI
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 393 LDGRTICGRRARVEMSN 443
+DG+ + GR RV +N
Sbjct: 96 MDGKELNGRHIRVNPAN 112
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 43.2 bits (97), Expect = 1e-04
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPL--RNVWVARNPP---GFAFVEFEDPRDAEDAIRG 392
K+++G L L DAF+++G + V V R GF FV F D A AI
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 393 LDGRTICGRRARVEMSN 443
+DG+ + GR RV +N
Sbjct: 96 MDGKELNGRHIRVNPAN 112
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 392
K+++G + + + L +AF+ YG + + V + GF FV F A AI+
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 393 LDGRTICGRRARVEMSN 443
LDGR + GR +V +N
Sbjct: 101 LDGRDLHGRVVKVNYAN 117
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Frame = +3
Query: 207 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRD 371
M++ +++V L + L FS +G ++ + R+ P GF F+ F+ D
Sbjct: 1 MAKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDD 60
Query: 372 AEDAIRGLDGRTICGRRARVEMS 440
A A++ LDG+ + GR VE++
Sbjct: 61 ARKALKSLDGKIVDGRLIFVEVA 83
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG----FAFVEFEDPRDAEDAIRGLD 398
+YV +L + EL+ F YG + + V R+ G F FV FE+P DA A+ L+
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 399 GR 404
G+
Sbjct: 287 GK 288
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +3
Query: 225 CKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIR 389
C +YVGDL N + +L D F+ + +V V R+ G+ +V + + DAE A++
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 390 GLDGRTICGRRARVEMSN 443
L+ + G+ R+ S+
Sbjct: 106 KLNYSYLNGKMIRITYSS 123
Score = 33.1 bits (72), Expect = 0.14
Identities = 17/81 (20%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +3
Query: 210 SRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFA----FVEFEDPRDAE 377
+++ +YV +L + + +L + F+ +G + + V R+P G + FV F +A
Sbjct: 323 NKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEAS 382
Query: 378 DAIRGLDGRTICGRRARVEMS 440
+ ++G+ + G+ V ++
Sbjct: 383 RVLNEMNGKMVGGKPLYVALA 403
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +3
Query: 210 SRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDA 374
S + + V L + + +LE+AFS GP+R ++ N GFAFV+F D
Sbjct: 15 SPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDV 74
Query: 375 EDAIRGLDGRTICGRRARVEMS 440
AI +G T+ GRR V+ +
Sbjct: 75 NRAIELKNGSTVGGRRITVKQA 96
Score = 35.5 bits (78), Expect = 0.027
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Frame = +3
Query: 195 ISGIMSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFE 359
+ G S+ K+ + +L A +++ FS G + +V++ +N P GFAFV+F
Sbjct: 321 LGGEGSKAQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFT 380
Query: 360 DPRDAEDAIRGLDGRTICGRR 422
+DA +AI+ +G + G+R
Sbjct: 381 CKKDAANAIKKFNGH-MFGKR 400
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 41.5 bits (93), Expect = 4e-04
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPL--RNVWVAR---NPPGFAFVEFEDPRDAEDAIRG 392
KI+VG + + + L +AFS YG + + V R GFAFV F +A +A++
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ- 93
Query: 393 LDGRTICGRRARV 431
LDG+ + GRR RV
Sbjct: 94 LDGQDLHGRRIRV 106
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 41.5 bits (93), Expect = 4e-04
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 201 GIMSRYGDCKIYVGDLG-NNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAE 377
GI C + V +L ++ + +L + FS YG + + + RN P A V+ D AE
Sbjct: 237 GITGTNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAE 296
Query: 378 DAIRGLDGRTICGRRARVEMS 440
A+ L G + G+R V S
Sbjct: 297 LAVHFLKGAMLFGKRLEVNFS 317
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 41.1 bits (92), Expect = 5e-04
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVA--RNPPGFAFVEFEDPRDAEDAIRGLDGR 404
+YV +L N + E+ D F YG +R + + + G AFV +ED DA++A+ L G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSGF 80
Query: 405 TICGR 419
+ R
Sbjct: 81 NVANR 85
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 41.1 bits (92), Expect = 5e-04
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 410
+ + ++ S EL F YG +R + N F+E+ D RDAE A++ L+ I
Sbjct: 272 LVIFNVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEI 331
Query: 411 CGRRARVEMS 440
G+ ++E+S
Sbjct: 332 GGKCIKLELS 341
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 41.1 bits (92), Expect = 5e-04
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 410
+ + ++ S EL F YG +R + N F+E+ D RDAE A++ L+ I
Sbjct: 285 LVIFNVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEI 344
Query: 411 CGRRARVEMS 440
G+ ++E+S
Sbjct: 345 GGKCIKLELS 354
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 41.1 bits (92), Expect = 5e-04
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Frame = +3
Query: 210 SRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDA 374
++ G +YVGDL + +L +AF+ G + +V V R+ G+ +V + P+DA
Sbjct: 40 AQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDA 99
Query: 375 EDAIRGLDGRTICGRRARVEMS 440
A+ L+ + GR RV S
Sbjct: 100 SRALNELNFMALNGRAIRVMYS 121
Score = 37.5 bits (83), Expect = 0.007
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRDAEDAIRGLD 398
+YV +L + S EL F +G + + R+ GF FV FE+ DA A+ L+
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 399 GRT 407
G+T
Sbjct: 286 GKT 288
Score = 35.1 bits (77), Expect = 0.036
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFA----FVEFEDPRDAEDAIRGLD 398
+YV +L + + +L + F+ +G + + V R+P G + FV F P +A AI ++
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388
Query: 399 GRTI 410
G+ I
Sbjct: 389 GKMI 392
Score = 34.3 bits (75), Expect = 0.063
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +3
Query: 207 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP----PGFAFVEFEDPRDA 374
+ + G I++ +L + L + FS +GP+ + VA +P G+ FV+++ A
Sbjct: 127 LRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAA 186
Query: 375 EDAIRGLDGRTICGRRARV 431
+ AI L+G + ++ V
Sbjct: 187 QGAIDKLNGMLLNDKQVYV 205
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 40.7 bits (91), Expect = 7e-04
Identities = 35/142 (24%), Positives = 53/142 (37%), Gaps = 16/142 (11%)
Frame = +3
Query: 207 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRD 371
MS + + ++G L S L DAF YG L V + GF F+ F++ +
Sbjct: 1 MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 372 AEDAIRG-----LDGRTICGRRARVEM------SNXXXXXXXXXXXXXXXXXXXXXXXXC 518
++AI LDGRTI +A+ ++ C
Sbjct: 61 MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGGDC 120
Query: 519 YDCGDRGHYARDCSXXXXXXXG 584
+ CG GH+AR+C G
Sbjct: 121 FKCGKPGHFARECPSESSRDGG 142
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLR-NVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 407
+YVG++ ++P L++ F+ GP+ + + ++ + FV + D R A AI L+GR
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRH 120
Query: 408 ICGRRARV 431
+ G+ +V
Sbjct: 121 LFGQPIKV 128
Score = 37.5 bits (83), Expect = 0.007
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPL---RNVWVARN--PPGFAFVEFEDPRDAEDAIRGL 395
I+VGDL + L +FS + R +W + GF FV F + +DA+ AI +
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 396 DGRTICGRRAR 428
+G+ + R+ R
Sbjct: 206 NGKWLSSRQIR 216
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 40.7 bits (91), Expect = 7e-04
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFS-------YYGPLRNVWVARN--PPGFAFVEFEDPRDAEDA 383
I+VGDL + L D+FS YY R +W + GF FV F + +DA+ A
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 209
Query: 384 IRGLDGRTICGRRAR 428
I ++G+ + R+ R
Sbjct: 210 INEMNGKWVSSRQIR 224
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAIRG 392
++YVG+L LE FS G + V + GF FV ++ ++ ++AI+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 393 LDGRTICGRRARV 431
LDG + GR+ RV
Sbjct: 265 LDGADLDGRQIRV 277
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDPRDAEDAIRGL 395
+YVG + + ++ +L FS YG + +V + R+ GFAF+ +ED R A+ L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 396 DGRTICGRRARVE 434
+G + GR +V+
Sbjct: 98 NGALVLGRTIKVD 110
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Frame = +3
Query: 210 SRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG-----FAFVEFEDPRDA 374
SR+G +YVGDL + ++ +L D FS P+ +V + RN +A++ F+ P A
Sbjct: 18 SRFGS--LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSA 75
Query: 375 EDAIRGLDGRTICGRRARVEMS 440
+A+ L+ + G+ R+ S
Sbjct: 76 SNAMTRLNHSDLKGKAMRIMWS 97
Score = 32.7 bits (71), Expect = 0.19
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRDAEDAIRGLD 398
+YV +L + L FS YG + +V V R+ GF FV F +P +A+ A+ L
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLC 263
Query: 399 G 401
G
Sbjct: 264 G 264
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +3
Query: 210 SRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN---PPGFAFVEFEDPRDAED 380
+R G +YV +L ++ + LE F +G + + V GF FV+F+ + A
Sbjct: 107 TRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVS 166
Query: 381 AIRGLDGRTICGRR 422
A L G + G++
Sbjct: 167 ARSALHGSMVYGKK 180
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVAR----NPPGFAFVEFEDPRDAEDAIRGL 395
K++VG L N S+ E++ FS YG ++++ + R G F+++E A A+ L
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 396 DGRTI 410
+GR I
Sbjct: 170 NGRHI 174
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVAR----NPPGFAFVEFEDPRDAEDAIRGL 395
K++VG L N S+ E++ FS YG ++++ + R G F+++E A A+ L
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 396 DGRTI 410
+GR I
Sbjct: 161 NGRHI 165
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVAR----NPPGFAFVEFEDPRDAEDAIRGL 395
K++VG L N S+ E++ FS YG ++++ + R G AF+++E A A+ +
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 396 DGR 404
+G+
Sbjct: 167 NGK 169
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVAR----NPPGFAFVEFEDPRDAEDAIRGL 395
K++VG L N S+ E++ FS YG ++++ + R G AF+++E A A+ +
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 396 DGR 404
+G+
Sbjct: 167 NGK 169
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +3
Query: 339 FAFVEFEDPRDAEDAIRGLDGRTICGRRARVEM 437
F FV ++ A++AI ++GR + G++ +V++
Sbjct: 392 FGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQL 424
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 39.5 bits (88), Expect = 0.002
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Frame = +3
Query: 201 GIMSRY--GDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG----FAFVEFED 362
G++ Y G ++YVG+L N S+ +L F +G + V V R+ G F FV+F
Sbjct: 275 GMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFAR 334
Query: 363 PRDAEDAIRGLDGR-TICGRRARV 431
DA +A+ L+G+ I GR +V
Sbjct: 335 LEDARNAL-NLNGQLEIAGRAIKV 357
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/52 (32%), Positives = 31/52 (59%)
Frame = +3
Query: 264 KPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGR 419
K ++++ S +G L +++V +N GF ++ FE+ + A A R L GR G+
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAGK 539
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPL---RNVWVARN--PPGFAFVEFEDPRDAEDAIRGL 395
I+VGDL + L D+FS + R +W + GF FV F + +DA+ AI +
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 396 DGRTICGRRAR 428
+G+ + R+ R
Sbjct: 210 NGKWVSSRQIR 220
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 410
++V ++ +N EL F YG +R ++ GF + + D R A A+R L + +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 411 CGRRARVEMS 440
R+ + S
Sbjct: 230 RRRKLDIHFS 239
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/70 (31%), Positives = 36/70 (51%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 410
+ V +L + S +L F +G ++ + + FVEF D R AE A++ L+ I
Sbjct: 255 LVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEI 314
Query: 411 CGRRARVEMS 440
G+R +VE S
Sbjct: 315 AGKRIKVEPS 324
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 410
++V ++ +N EL F YG +R ++ GF + + D R A A+R L + +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 411 CGRRARVEMS 440
R+ + S
Sbjct: 230 RRRKLDIHFS 239
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/70 (31%), Positives = 36/70 (51%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 410
+ V +L + S +L F +G ++ + + FVEF D R AE A++ L+ I
Sbjct: 255 LVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEI 314
Query: 411 CGRRARVEMS 440
G+R +VE S
Sbjct: 315 AGKRIKVEPS 324
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 225 CKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIR 389
C++YV ++ + +L D F +G + +V V+RNP G +V A+ AI
Sbjct: 108 CELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIA 167
Query: 390 GLDGRTICGRRARVEMS 440
LDG + GR RV S
Sbjct: 168 SLDGTEVGGREMRVRYS 184
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRDAEDAIRGLD 398
+YV +L + + +L++AF YG + + V ++ GF FV FE+ DA A+ L+
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90
Query: 399 G 401
G
Sbjct: 91 G 91
Score = 36.7 bits (81), Expect = 0.012
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +3
Query: 213 RYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP----PGFAFVEFEDPRDAED 380
++ +YV +L + S +L++ FS +G + + V R+P G FV F P +A +
Sbjct: 128 KFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATE 187
Query: 381 AIRGLDGRTI 410
A+ L G+ I
Sbjct: 188 AMSQLSGKMI 197
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 392
++YVG+L + LE FS +G + V + GF FV D + +AI
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 393 LDGRTICGRRARVEMS 440
LDG+ + GR RV ++
Sbjct: 305 LDGQNLEGRAIRVNVA 320
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDPRDAEDAIRG 392
+I+VG L AS+ +L+ F + G + V + +NP G AF+ F A+ A++
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 393 LDGRTICGRRARVEMS 440
L I G++ V S
Sbjct: 275 LKSPMINGKKCGVTAS 290
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP----GFAFVEFEDPRDAEDAIRGLD 398
+Y GDL ++ L D F + + +V V R+ G+A++ F +P DA A+ L+
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110
Query: 399 GRTICGRRARVEMSN 443
+ R R+ +SN
Sbjct: 111 YTPLFDRPIRIMLSN 125
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNV-WVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 407
+YVG++ ++P L++ F+ GP+ + + + + FV + D R A AI L+GR
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRH 115
Query: 408 ICGRRARV 431
+ G+ +V
Sbjct: 116 LFGQPIKV 123
Score = 35.1 bits (77), Expect = 0.036
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYY---GPLRNVWVARN--PPGFAFVEFEDPRDAEDAIRGL 395
I+VGDL + L FS Y R +W + GF FV F + +DA+ AI +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 396 DGRTICGRRAR 428
G+ + R+ R
Sbjct: 201 TGKWLGSRQIR 211
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVA-----RNPPGFAFVEFEDPRDAEDAIRGL 395
+Y+G++ ++ +L + FS G ++ + + + P GF FV F D EDA++ +
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYI 95
Query: 396 DGRTICGRRARVE 434
G + R RV+
Sbjct: 96 SGTILDDRPIRVD 108
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Frame = +3
Query: 222 DCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDPRDAEDAI 386
D K+YVG+L N S+ +L F +GP+ V + +P GF F++F ++ A
Sbjct: 264 DRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQ 323
Query: 387 RGLDGR-TICGRRARV 431
L+G+ I GR +V
Sbjct: 324 IALNGKLEIAGRTIKV 339
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 264 KPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGR 404
+ ++ D S YGP+ +++V +N GF ++ F+ A A R + R
Sbjct: 458 RDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMHMR 504
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDA 383
+Y+G + + + E+E FS +G ++ V VARN F F++FEDP AE A
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIA 117
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 410
I+VG + + +L FS +G + +V + G FV+F D + AEDAI L+G T+
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK-GCGFVQFADRKSAEDAIESLNG-TV 380
Query: 411 CGR 419
G+
Sbjct: 381 IGK 383
Score = 31.9 bits (69), Expect = 0.33
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGL 395
++VGDL + + L FS+ G + +V V RN G+ FVEF AE+ ++
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 396 DG 401
G
Sbjct: 170 SG 171
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/30 (66%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +3
Query: 336 GFAFVEFEDPRDAEDAIRGLDGRTI-CGRR 422
G+AFV FED RDAEDAIR D T GRR
Sbjct: 10 GYAFVYFEDERDAEDAIRRTDNTTFGYGRR 39
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 270 ELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVE 434
++E F YG + NV + RN FAFV+F DA A+ + + VE
Sbjct: 85 DMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVE 136
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 38.3 bits (85), Expect = 0.004
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAF-SYYGPL-RNVWVARN---PPGFAFVEFEDPRDAEDAIRG 392
K+Y G+LG N + L+DAF G L V RN GF F+ FE + + A+
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 393 LDGRTICGRRARVEMSN 443
++G + GR R+ +++
Sbjct: 280 MNGVEVEGRALRLNLAS 296
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +3
Query: 222 DCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAI 386
D +++ GDLGN + L AF+ + V R+ G+ FV F +P D A+
Sbjct: 136 DYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAAL 195
Query: 387 RGLDGRTICGRRARVEMSN 443
+ ++G+ + R ++ S+
Sbjct: 196 KEMNGKYVGNRPIKLRKSS 214
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 392
+ +VG L LE AF+ YG + + + + GF FV F+D + +DAI G
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 393 LDGRTICGRRARV 431
++G+ + GR V
Sbjct: 69 MNGQDLDGRSITV 81
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 392
+ +VG L LE AF+ YG + + + + GF FV F+D + +DAI G
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 393 LDGRTICGRRARV 431
++G+ + GR V
Sbjct: 69 MNGQDLDGRSITV 81
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 37.9 bits (84), Expect = 0.005
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVAR------NPPGFAFVEFEDPRDAEDAIR 389
KI+VG+L KPE E+ F +GP+ NV + + GF F+ + + A A+
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVE 225
Query: 390 GLDGRTICGRRARVEMSN 443
DG GR V++ +
Sbjct: 226 -FDGVEFHGRILTVKLDD 242
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +3
Query: 213 RYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAE 377
RY K+Y+G L + L+DAFS + + V N G+ FV F A
Sbjct: 27 RYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSAN 86
Query: 378 DAIRGLDGRTICGRRARVEMS 440
AI ++G+ + G V ++
Sbjct: 87 SAISAMNGQELNGFNISVNVA 107
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 37.5 bits (83), Expect = 0.007
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-GFAFVEFEDPRDAEDAIRGLDGRT 407
++VG+L + + EL D F +G L ++ A P +AFV F DA AI L G
Sbjct: 25 LWVGNLPHGILERELADRFLRFGELESL--AFQPGRSYAFVNFNHDEDAFAAIESLQGFP 82
Query: 408 ICGRRARVEMS 440
+ G R+E +
Sbjct: 83 LSGNPLRIEFA 93
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 37.5 bits (83), Expect = 0.007
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 410
+ + +L S L F YGP++ + FVEF D RDA A ++G+ I
Sbjct: 215 LVIFNLDPEVSSITLRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEI 274
Query: 411 CGRRARVEMS 440
G++ +E S
Sbjct: 275 GGKQVVIEFS 284
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 294 YGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGR 404
YG +R V + R G V F D RDA+ A+R + GR
Sbjct: 129 YGDVRGVQMERISEGIVTVHFYDIRDAKRAVREVCGR 165
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 37.5 bits (83), Expect = 0.007
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP----GFAFVEFEDPRDAEDAIRGL 395
K+YV L +K E+ + FS YG + ++++A + G+AFV+F A AI+ L
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 396 DG 401
+G
Sbjct: 268 NG 269
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +3
Query: 204 IMSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPR 368
+ SR ++V + ++++ L AFS YG + V V + P GFA+V F
Sbjct: 14 LFSRSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKE 73
Query: 369 DAEDAIRGLDGRTICGR 419
+AE A+ L+ + + GR
Sbjct: 74 EAEKALLELNAQLVDGR 90
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 37.5 bits (83), Expect = 0.007
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +3
Query: 213 RYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAE 377
R D +YVG L S+ L + F GP+ NV+V ++ + F+E+ DA+
Sbjct: 21 RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80
Query: 378 DAIRGLDGRTICGRRARVEMSN 443
AI+ L+ + G+ RV ++
Sbjct: 81 YAIKVLNMIKLHGKPIRVNKAS 102
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDPRDAEDAIRGL 395
+YV L + ++ +LED F+ G + +V + +P GF F+ + DA IR L
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 106
Query: 396 DGRTICGRRARVE 434
D + GR VE
Sbjct: 107 DHSVLQGRVITVE 119
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDPRDAEDAIRGL 395
+YV L + ++ +LED F+ G + +V + +P GF F+ + DA IR L
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 396 DGRTICGRRARVE 434
D + GR VE
Sbjct: 137 DHSVLQGRVITVE 149
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 37.1 bits (82), Expect = 0.009
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +3
Query: 273 LEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVE 434
L F+ + L + P GF F+ FE DA+ A++ L+G+ + GR VE
Sbjct: 87 LRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVE 140
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 37.1 bits (82), Expect = 0.009
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 392
+IYVG+L + LE FS +G + + V + GF FV+ + + AI
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 393 LDGRTICGRRARVEMS 440
LDG+ + GR +V ++
Sbjct: 268 LDGQNLEGRAIKVNVA 283
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 37.1 bits (82), Expect = 0.009
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAIRG 392
KI+VG L + E F YGP+ +V + P GF FV F D DA D++
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF-DSEDAVDSVLH 169
Query: 393 LDGRTICGRRARVE 434
+ G++ V+
Sbjct: 170 KTFHDLSGKQVEVK 183
Score = 32.3 bits (70), Expect = 0.25
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIR- 389
K++VG + + +L + F+ YG + V R+ P GF FV F DP + ++
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 390 --GLDGRTICGRRA 425
+D R + +RA
Sbjct: 67 KHSIDTREVDVKRA 80
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 37.1 bits (82), Expect = 0.009
Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 5/117 (4%)
Frame = +3
Query: 222 DCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-PPG----FAFVEFEDPRDAEDAI 386
D ++V L +L FS +G + + V R+ G +AF+EFE+ E A
Sbjct: 242 DNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAY 301
Query: 387 RGLDGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYARDC 557
+D I RR V+ S C+ CG H A+DC
Sbjct: 302 FKMDNALIDDRRIHVDFSQ---SVSKLWSQFRQKDSQKGKGNGCFKCGSTDHIAKDC 355
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 36.7 bits (81), Expect = 0.012
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 392
K+++G + + + L++ F YG L + R+ GF F+ F DP AE I
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 393 ---LDGRTICGRRA 425
+DGRT+ ++A
Sbjct: 76 KHIIDGRTVEAKKA 89
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 36.7 bits (81), Expect = 0.012
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP----PGFAFVEFEDPRDAEDAIRGL 395
K++V ++ A+K EL FS +G ++++ + + G+AFVEF ++A +A + L
Sbjct: 670 KLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKAL 729
Query: 396 DGRTICGRRARVEMSN 443
GR +E +N
Sbjct: 730 ASTHFYGRHLVLEWAN 745
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 36.3 bits (80), Expect = 0.016
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +3
Query: 270 ELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVE 434
+L F+ YG + +V++ R+ GFAFV ++ +A A+ LDGR + GR V+
Sbjct: 31 DLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQ 90
Query: 435 MS 440
+
Sbjct: 91 FA 92
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 36.3 bits (80), Expect = 0.016
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +3
Query: 270 ELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVE 434
+L F+ YG + +V++ R+ GFAFV ++ +A A+ LDGR + GR V+
Sbjct: 31 DLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQ 90
Query: 435 MS 440
+
Sbjct: 91 FA 92
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 36.3 bits (80), Expect = 0.016
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRN--VWVARN---PPGFAFVEFEDPRDAEDAIRG 392
+I+VG L + +LE AFS +G + + + + R+ GF F+ F D R +++IR
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 393 LDGR 404
+ GR
Sbjct: 68 MHGR 71
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.9 bits (79), Expect = 0.021
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 392
K+++G + + + L D FS YG + + R+ GF F+ F DP +E I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 393 ---LDGRTICGRRA 425
+DGRT+ ++A
Sbjct: 67 KHIIDGRTVEAKKA 80
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.9 bits (79), Expect = 0.021
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 392
K+++G + + + L D FS YG + + R+ GF F+ F DP +E I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 393 ---LDGRTICGRRA 425
+DGRT+ ++A
Sbjct: 67 KHIIDGRTVEAKKA 80
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 35.9 bits (79), Expect = 0.021
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 392
K+++G + + + L D FS YG + + R+ GF F+ F DP +E I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 393 ---LDGRTICGRRA 425
+DGRT+ ++A
Sbjct: 67 KHIIDGRTVEAKKA 80
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 35.9 bits (79), Expect = 0.021
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3
Query: 516 CYDCGDRGHYARDCS 560
CY+CGD GH+ARDC+
Sbjct: 134 CYNCGDTGHFARDCT 148
Score = 34.3 bits (75), Expect = 0.063
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 516 CYDCGDRGHYARDCS 560
CY CGD GH+ARDC+
Sbjct: 200 CYTCGDVGHFARDCT 214
Score = 32.7 bits (71), Expect = 0.19
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 516 CYDCGDRGHYARDCS 560
CY CGD GH ARDC+
Sbjct: 166 CYTCGDVGHVARDCT 180
Score = 32.3 bits (70), Expect = 0.25
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 516 CYDCGDRGHYARDCS 560
CY CG GH+AR+CS
Sbjct: 282 CYKCGKEGHFARECS 296
Score = 30.7 bits (66), Expect = 0.77
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
CY CG GH ARDC
Sbjct: 255 CYQCGGSGHLARDC 268
Score = 30.3 bits (65), Expect = 1.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 516 CYDCGDRGHYARDCS 560
CY CG GH ARDC+
Sbjct: 232 CYSCGGVGHIARDCA 246
Score = 29.5 bits (63), Expect = 1.8
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
CY+CG+ GH ++DC
Sbjct: 102 CYNCGELGHISKDC 115
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 35.9 bits (79), Expect = 0.021
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 410
+ + +L S L F YG ++ V FVEF D RDA A+R ++G+ I
Sbjct: 185 LVIMNLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVI 244
Query: 411 CGRRARVEMS 440
G+ ++ S
Sbjct: 245 SGKPMVIQFS 254
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 35.9 bits (79), Expect = 0.021
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +3
Query: 216 YGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVAR-----NPPGFAFVEFEDPRDAED 380
Y K++VG + S+ L+ FS YG + VA+ P GF FV F + D
Sbjct: 3 YDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVK 62
Query: 381 AIR 389
A+R
Sbjct: 63 ALR 65
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 35.9 bits (79), Expect = 0.021
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGL 395
++V L N ++ L++ F +G + +V +A + P G +VEF+ DAE A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 396 DGRTICGR 419
DG I G+
Sbjct: 160 DGAQIDGK 167
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 35.9 bits (79), Expect = 0.021
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGL 395
++V L N ++ L++ F +G + +V +A + P G +VEF+ DAE A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 396 DGRTICGR 419
DG I G+
Sbjct: 160 DGAQIDGK 167
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 35.9 bits (79), Expect = 0.021
Identities = 20/67 (29%), Positives = 36/67 (53%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 410
++VG L + + L++ FS YG + +V + FV+F + AE+A+R L+G +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG-KRCGFVQFSEKSCAEEALRMLNGVQL 321
Query: 411 CGRRARV 431
G R+
Sbjct: 322 GGTTVRL 328
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 35.5 bits (78), Expect = 0.027
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGL 395
++VG++ +A++ +L + GP+ + + + P G+ F E++D A A R L
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 396 DGRTICGRRARVEMS 440
I GR+ RV+ +
Sbjct: 71 QSYEINGRQLRVDFA 85
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 34.7 bits (76), Expect = 0.047
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Frame = +3
Query: 198 SGIMSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFED 362
S + SR+ + + V +L + P+L + F +G + VA + GF FV F
Sbjct: 165 SDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVS 224
Query: 363 PRDAEDAIRGLDGRTICGRRARVEMS 440
DA+ AI L+G RVE S
Sbjct: 225 REDAQRAINKLNGYGYDNLILRVEWS 250
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 34.7 bits (76), Expect = 0.047
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +3
Query: 207 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRD 371
MS +C +Y+G++ S L D G + ++ + R+ P GFAF E+E
Sbjct: 1 MSGTSNCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEI 60
Query: 372 AEDAIRGLDG 401
A+ A++ G
Sbjct: 61 ADYAVKLFSG 70
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 34.7 bits (76), Expect = 0.047
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +3
Query: 198 SGIMSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFED 362
S + R + + V +L + +P+L + F +G + V+VA + GF FV F
Sbjct: 204 SDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVS 263
Query: 363 PRDAEDAIRGLDG 401
DA+ AI L+G
Sbjct: 264 REDAQRAINKLNG 276
>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
spliceosomal protein U1A / U1snRNP-specific protein
identical to GB:Z49991 U1snRNP-specific protein
[Arabidopsis thaliana]
Length = 250
Score = 34.7 bits (76), Expect = 0.047
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDG 401
++V +L + + L+ F Y + V + PG AFVEF D + A++GL G
Sbjct: 179 LFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQG 235
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 34.3 bits (75), Expect = 0.063
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 410
+ V +L ++ S EL YG ++ + + ++EF D R A A+ GL+G +
Sbjct: 304 LLVNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEV 363
Query: 411 CGRRARV 431
G++ ++
Sbjct: 364 AGKKLQL 370
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 34.3 bits (75), Expect = 0.063
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +3
Query: 225 CKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAI- 386
CK+++G + S+ L D F +G + + ++ GF FV F DP AE +
Sbjct: 6 CKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVL 65
Query: 387 --RGLDGRTICGRRA 425
+DG+ + ++A
Sbjct: 66 LKHIIDGKIVEAKKA 80
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 34.3 bits (75), Expect = 0.063
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +3
Query: 225 CKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAI- 386
CK+++G + S+ L D F +G + + ++ GF FV F DP AE +
Sbjct: 6 CKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVL 65
Query: 387 --RGLDGRTICGRRA 425
+DG+ + ++A
Sbjct: 66 LKHIIDGKIVEAKKA 80
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 33.9 bits (74), Expect = 0.083
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 516 CYDCGDRGHYARDCS 560
CY CG+ GH+ARDC+
Sbjct: 185 CYSCGESGHFARDCT 199
Score = 32.7 bits (71), Expect = 0.19
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 516 CYDCGDRGHYARDCS 560
CY CG+ GH ARDCS
Sbjct: 131 CYKCGEPGHMARDCS 145
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 33.9 bits (74), Expect = 0.083
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +3
Query: 198 SGIMSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFED 362
SG S G+ ++YVG+L LE+ F+ G + V + GF FV
Sbjct: 241 SGSGSGSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSS 299
Query: 363 PRDAEDAIRGLDGRTICGRRARV 431
++ + AI L+G + GR+ RV
Sbjct: 300 SQEVQKAINSLNGADLDGRQIRV 322
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 33.9 bits (74), Expect = 0.083
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +3
Query: 198 SGIMSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFED 362
SG S G+ ++YVG+L LE+ F+ G + V + GF FV
Sbjct: 249 SGSGSGSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSS 307
Query: 363 PRDAEDAIRGLDGRTICGRRARV 431
++ + AI L+G + GR+ RV
Sbjct: 308 SQEVQKAINSLNGADLDGRQIRV 330
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 33.9 bits (74), Expect = 0.083
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP----GFAFVEFEDPRDAEDAIRGLD 398
+Y+ +L + S+ L + F+ +G + ++ +A++ G+AFV F++P DA A ++
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 399 G 401
G
Sbjct: 263 G 263
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG----FAFVEFEDPRDAEDAIRGLD 398
IYV ++ ++ EL FS G + + + + G F FV F P +A DA++
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365
Query: 399 GRTICGR 419
G+ G+
Sbjct: 366 GQMFHGK 372
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG-----FAFVEFEDPRDAEDAIRGL 395
+YVGDL + ++ L DAF+ + L +V + ++ + + F +DA AI
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 396 DGRTICGRRARVEMS 440
+ + G+ RV S
Sbjct: 86 NNSLLNGKMIRVMWS 100
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 33.9 bits (74), Expect = 0.083
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 516 CYDCGDRGHYARDCS 560
CY CG+ GH+ARDC+
Sbjct: 182 CYSCGESGHFARDCT 196
Score = 29.5 bits (63), Expect = 1.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 516 CYDCGDRGHYARDCS 560
C+ CG+ GH AR+CS
Sbjct: 138 CFKCGEPGHMARECS 152
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 294 YGPLRNVWVARN-PPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVEMSN 443
+GP +V V + P G V F+D RDA+ I ++GR R+ + +
Sbjct: 440 HGPFDSVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNGRWYAKRQIHASLDD 490
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 392
+ +VG L + +L+ FS +G + + + + GF FV F+D + DAI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 393 LDGRTICGR 419
++G+ + GR
Sbjct: 67 MNGKELDGR 75
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 392
+ +VG L + +L+ FS +G + + + + GF FV F+D + DAI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 393 LDGRTICGR 419
++G+ + GR
Sbjct: 67 MNGKELDGR 75
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 392
+ +VG L + +L+ FS +G + + + + GF FV F+D + DAI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 393 LDGRTICGR 419
++G+ + GR
Sbjct: 67 MNGKELDGR 75
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 33.1 bits (72), Expect = 0.14
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Frame = +3
Query: 222 DCKIYVGDLGNNASKPELEDAFSYYGPLRNVWV-ARNPPG----FAFVEFEDPRDAEDAI 386
D I V DL NA+ +E F +GP++ + NP +AFVEFE+ A+ AI
Sbjct: 549 DAHIRVKDLPPNATVALVESVFKQFGPIKKGRIRVINPANSNYWYAFVEFEEADAAKRAI 608
Query: 387 R----GLDGRT 407
+ +DG T
Sbjct: 609 QASPLNVDGHT 619
Score = 31.5 bits (68), Expect = 0.44
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 273 LEDAFSYYGPLRNVWVARNPP--GFAFVEFEDPRDAEDAIRGLDGRTICGRRARVE 434
+EDA +GP+ + + ++ P FAFV+FE A AI R IC + V+
Sbjct: 761 IEDALKKFGPINAISIIKSGPLYKFAFVDFEKADVANRAIMASPVR-ICEKNVNVQ 815
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 33.1 bits (72), Expect = 0.14
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
CY CGD GH+ARDC
Sbjct: 132 CYMCGDVGHFARDC 145
Score = 32.3 bits (70), Expect = 0.25
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 516 CYDCGDRGHYARDCSXXXXXXXG 584
CY+CG GH ARDC G
Sbjct: 254 CYECGGTGHLARDCDRRGSGSSG 276
Score = 30.3 bits (65), Expect = 1.0
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
CY CG GH+ARDC
Sbjct: 198 CYMCGGVGHFARDC 211
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
CY CG+ GH A+DC
Sbjct: 163 CYSCGEVGHLAKDC 176
Score = 28.7 bits (61), Expect = 3.1
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
C++CG+ GH A+DC
Sbjct: 96 CFNCGEVGHMAKDC 109
Score = 28.7 bits (61), Expect = 3.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 516 CYDCGDRGHYARDCS 560
C+ CG GH+AR+C+
Sbjct: 284 CFICGKEGHFARECT 298
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 32.7 bits (71), Expect = 0.19
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAI-- 386
K+++G + + ++ L++ FS +G + + ++ GF FV F DP AE I
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 387 -RGLDGRTICGRRA 425
+DGR + ++A
Sbjct: 67 KHNIDGRLVEAKKA 80
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 32.7 bits (71), Expect = 0.19
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAI-- 386
K+++G + + ++ L++ FS +G + + ++ GF FV F DP AE I
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 387 -RGLDGRTICGRRA 425
+DGR + ++A
Sbjct: 67 KHNIDGRLVEAKKA 80
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 32.7 bits (71), Expect = 0.19
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG-----FAFVEFEDPRDAEDAIRGL 395
+YVG L + ++ L AF +G +++V + F FV F + DA A+ +
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 396 DGRTICGR 419
DG + GR
Sbjct: 75 DGAELYGR 82
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWV----ARNPPG--FAFVEFEDPRDAEDAIR 389
+YV +L ++ S E+E+ F +G ++ V ++ G +AFVEFED E+AI+
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 317
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWV----ARNPPG--FAFVEFEDPRDAEDAIR 389
+YV +L ++ S E+E+ F +G ++ V ++ G +AFVEFED E+AI+
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 376
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 32.3 bits (70), Expect = 0.25
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 516 CYDCGDRGHYARDCS 560
CY CG GH+ARDC+
Sbjct: 239 CYKCGKEGHWARDCT 253
Score = 31.5 bits (68), Expect = 0.44
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 516 CYDCGDRGHYARDCS 560
CY CG +GH++RDC+
Sbjct: 306 CYKCGKQGHWSRDCT 320
Score = 30.7 bits (66), Expect = 0.77
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 516 CYDCGDRGHYARDCS 560
CY CG GH++RDC+
Sbjct: 342 CYKCGKAGHWSRDCT 356
Score = 28.7 bits (61), Expect = 3.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 516 CYDCGDRGHYARDCS 560
C+ CG GH++RDC+
Sbjct: 270 CFKCGKPGHWSRDCT 284
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 32.3 bits (70), Expect = 0.25
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 392
K+++G + + + L + FS +G + V V R P GF FV F DP + ++
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 393 ---LDGRTICGRRA 425
+D R + +RA
Sbjct: 67 KHHIDNRDVDVKRA 80
Score = 31.5 bits (68), Expect = 0.44
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAIRG 392
KI+VG L + E F YGP+ + + + P GF FV F D D+ D +
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSF-DSEDSVDLVLH 169
Query: 393 LDGRTICGRRARVE 434
+ G++ V+
Sbjct: 170 KTFHDLNGKQVEVK 183
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDG 401
+++ +L + + L+ F Y + + + PG AFVE+ED A A++ L G
Sbjct: 160 LFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQG 216
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 32.3 bits (70), Expect = 0.25
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGL 395
++VGDL + + L FS+ + +V V RN G+ FVEF AE+A++
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 396 DGRTI 410
G T+
Sbjct: 181 SGVTM 185
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 31.9 bits (69), Expect = 0.33
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRDAEDAIRGLD 398
+Y+ +L S+ L FS +G + +A++ GFAF+EFE A A+ +D
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHMD 78
Query: 399 GRTI 410
GR I
Sbjct: 79 GRLI 82
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 31.9 bits (69), Expect = 0.33
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Frame = +3
Query: 204 IMSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDPR 368
+ R K++VG + A++ E+ F +G + V + ++ G FV++ +
Sbjct: 113 VSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSK 172
Query: 369 DAEDAIRGLDGR-TICGRRARVEM 437
DA+ AIR L + T+ G V++
Sbjct: 173 DADRAIRALHNQITLPGGTGPVQV 196
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 31.9 bits (69), Expect = 0.33
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Frame = +3
Query: 204 IMSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDPR 368
+ R K++VG + A++ E+ F +G + V + ++ G FV++ +
Sbjct: 113 VSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSK 172
Query: 369 DAEDAIRGLDGR-TICGRRARVEM 437
DA+ AIR L + T+ G V++
Sbjct: 173 DADRAIRALHNQITLPGGTGPVQV 196
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 31.9 bits (69), Expect = 0.33
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-PGFAFVEFEDPRDAEDAIRGLDGRT 407
+++G+LG N ++ EL S + + + R F+EFED A + L G
Sbjct: 235 LFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSATNVHHNLQGAV 294
Query: 408 I 410
I
Sbjct: 295 I 295
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 31.9 bits (69), Expect = 0.33
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 392
KI++G L + + F YG + + + R+ P GF F+ F DP + I
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE- 78
Query: 393 LDGRTICGRRARVE 434
D I G++ ++
Sbjct: 79 -DTHVINGKQVEIK 91
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 31.9 bits (69), Expect = 0.33
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 392
KI++G L + + F YG + + + R+ P GF F+ F DP + I
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE- 78
Query: 393 LDGRTICGRRARVE 434
D I G++ ++
Sbjct: 79 -DTHVINGKQVEIK 91
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 31.9 bits (69), Expect = 0.33
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +3
Query: 219 GDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVAR-----NPPGFAFVEFEDPRDAEDA 383
G +I+VG L ++ ++ + +GPLR + + N G+AF ++DP + A
Sbjct: 373 GPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432
Query: 384 IRGLDG 401
L+G
Sbjct: 433 CAALNG 438
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 31.5 bits (68), Expect = 0.44
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGL 395
+++GDL + L FS G L +V V RN P G+ F+EF AE ++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 396 DGRTICG 416
+G + G
Sbjct: 86 NGTQMPG 92
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 31.5 bits (68), Expect = 0.44
Identities = 20/30 (66%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Frame = +3
Query: 357 EDPRDAEDAIRGLD----GRTICGRRARVE 434
ED RDAEDAIR LD GR GRR RVE
Sbjct: 2 EDERDAEDAIRALDRFEFGRK--GRRLRVE 29
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 31.5 bits (68), Expect = 0.44
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAIRG 392
K++VG L + K + D F YG + + R G+ FV F +DA+ A R
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTF---KDAKAATRA 74
Query: 393 LDGRT--ICGRRARVEMSN 443
+ T I GRRA +++
Sbjct: 75 CEDSTPIINGRRANCNLAS 93
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 31.5 bits (68), Expect = 0.44
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
CY CG+ GH+AR+C
Sbjct: 327 CYRCGEEGHFAREC 340
Score = 27.5 bits (58), Expect = 7.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
CY C GH+AR+C
Sbjct: 358 CYRCNGSGHFAREC 371
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG---FAFVEFEDPRDAEDAI 386
+YV D+ + ++ L FS G + + + +P FAFVEF D + A +A+
Sbjct: 143 VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEAL 197
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 410
++VG L ++ +L + F YG + + V + GFAF+ + +A A L G +
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFIYYRHVEEAVAAKEALQGANL 78
Query: 411 CG 416
G
Sbjct: 79 NG 80
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDG 401
+++ +L + L+ F Y + + + PG AFVE+ED + A++ L G
Sbjct: 156 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 212
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDG 401
+++ +L + L+ F Y + + + PG AFVE+ED + A++ L G
Sbjct: 157 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 213
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 30.7 bits (66), Expect = 0.77
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRDAEDAIRGLD 398
++VG++ + E++ F G + V + + P GFA+VEF + ++A++ L+
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ-LN 152
Query: 399 GRTICGRRARV 431
+ GR+ +V
Sbjct: 153 ESELHGRQLKV 163
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 30.7 bits (66), Expect = 0.77
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 392
KI+VG L + E F YG + + + ++ P GF FV + D + I+
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ- 101
Query: 393 LDGRTICGRRARVE 434
D I G++ ++
Sbjct: 102 -DNHIIIGKQVEIK 114
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 30.7 bits (66), Expect = 0.77
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRDAEDAIRGLD 398
+YVG++ + E++ F G + V + + P GFA+VEF + ++A++ L+
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149
Query: 399 GRTICGRRARV 431
+ GR+ +V
Sbjct: 150 ESELHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 30.7 bits (66), Expect = 0.77
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRDAEDAIRGLD 398
+YVG++ + E++ F G + V + + P GFA+VEF + ++A++ L+
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149
Query: 399 GRTICGRRARV 431
+ GR+ +V
Sbjct: 150 ESELHGRQLKV 160
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 30.7 bits (66), Expect = 0.77
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRGL 395
+YV L + +LE F+ G + + ++ P GFAFV +DAE I+ L
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133
Query: 396 DGRTICGR 419
+ + GR
Sbjct: 134 NQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 30.7 bits (66), Expect = 0.77
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRGL 395
+YV L + +LE F+ G + + ++ P GFAFV +DAE I+ L
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 132
Query: 396 DGRTICGR 419
+ + GR
Sbjct: 133 NQSVLEGR 140
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 30.7 bits (66), Expect = 0.77
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG---FAFVEFEDPRDAEDAI 386
+YV D+ + ++ L FS G + + + +P FAFVEF D + A A+
Sbjct: 130 VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSAL 184
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGL 395
++V L + L AF+ +G + + V + GF FV + D+ I G+
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGM 117
Query: 396 DGRTICG 416
DG+ + G
Sbjct: 118 DGKFLDG 124
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 30.3 bits (65), Expect = 1.0
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Frame = +3
Query: 192 FISGIMSRYGDCK---IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGF----AFV 350
++SG++ R + +YV L + P++ D F G + +V + G FV
Sbjct: 550 YMSGLLIRCFPSRKKTLYVCCLPRDTKMPDIIDFFKDVGQVVSVQLTTKRNGLRLSTGFV 609
Query: 351 EFEDPRDAEDAIRGLDGRTICGRRARVEMSN 443
EF +A+ A+ +G +CG + + M++
Sbjct: 610 EFASANEAKKALDMKNGEYLCGNKLILGMAS 640
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRGL 395
I+V ++ A+K L F+ +G + ++ +P G A++EF AE+A+ L
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENAL-SL 576
Query: 396 DGRTICGRRARV 431
DG + R ++
Sbjct: 577 DGTSFMSRILKI 588
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 516 CYDCGDRGHYARDCS 560
C+ CG GH ARDCS
Sbjct: 114 CHSCGKSGHRARDCS 128
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 516 CYDCGDRGHYARDCSXXXXXXXGF 587
C++CG RGH A +C GF
Sbjct: 231 CHNCGGRGHRAYECPSARVADRGF 254
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 324 RNPPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVEMS 440
+ P GF F EFE AIR L RTI G+ V ++
Sbjct: 241 KKPKGFGFYEFESAEGILRAIRLLTQRTIDGQELLVNVN 279
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 24.6 bits (51), Expect(2) = 1.6
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +3
Query: 234 YVGDLGNNASKPELEDAFSYYG 299
YVG+L ++ + +L++AFS +G
Sbjct: 11 YVGNLESDTEENDLKNAFSQFG 32
Score = 23.8 bits (49), Expect(2) = 1.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 339 FAFVEFEDPRDAEDAIRG 392
+ FV F+D + +DAI+G
Sbjct: 73 YGFVSFKDEKSMKDAIKG 90
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 29.5 bits (63), Expect = 1.8
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Frame = +3
Query: 219 GDCKIYVGDLGNNASKPELEDAFSYYGPLRNV-----WVARNPPGFAFVEFEDPRDAEDA 383
G ++VGDL + ELE YG ++ V + G+ VEF DP A
Sbjct: 232 GGAFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASAC 291
Query: 384 IRGLDGRTICGRRARVEMSN 443
L+G GR VE ++
Sbjct: 292 KDALNGYPFNGRPCVVEYAS 311
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRDAEDAIRGLD 398
IYVG++ + E++ F G + V + + P GFA+VEF + ++++ L+
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLI-LN 163
Query: 399 GRTICGRRARV 431
+ GR+ +V
Sbjct: 164 ESELHGRQIKV 174
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 29.5 bits (63), Expect = 1.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
CY+C +GH ARDC
Sbjct: 197 CYECKGKGHIARDC 210
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAIRG 392
K+++ L S+ L AF +G L V + ++ G+AF+E+ A A++
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 393 LDGRTICG 416
++G+ I G
Sbjct: 343 MNGKIING 350
>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q10572 Sex determination
protein fox-1 (Feminizing locus on X protein 1)
{Caenorhabditis elegans}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVA--RNPPGFAFVEFEDPRDAEDAI 386
+Y+ +L + + + D F Y +R V + + G AFV +ED DA+ A+
Sbjct: 22 LYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGTKGTAFVVYEDIYDAKKAV 75
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 392
KI+VG L + L++AF +G + + V + GF FV ++ A +A++
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 393 LDGRTICGR 419
+ + + GR
Sbjct: 97 MQNKELDGR 105
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +3
Query: 255 NASKPELEDAFSYYGPLRNVWVARNPPG----FAFVEFEDPRDAEDAIRGLDGRTICGRR 422
+ ++ L D FS G + +V + R G FA++ F ++A+DAI ++ I R
Sbjct: 13 HVTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYVNKCFIDTYR 72
Query: 423 ARVEMSN 443
VE+++
Sbjct: 73 ISVEVAD 79
>At4g01290.1 68417.m00170 expressed protein
Length = 991
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -3
Query: 570 YAFESNRVHNALCHHNHSSGH-HMDVVVAETAAEDHGRHNLVHH 442
+ F N +H HH +SGH D + + H + NL HH
Sbjct: 843 HRFPPNMIHRPPFHHTPTSGHPEFDRLPPHMMQKMHMQDNLQHH 886
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 29.1 bits (62), Expect = 2.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
CY CG GH+AR C
Sbjct: 36 CYKCGKLGHFARSC 49
>At1g72620.1 68414.m08397 hydrolase, alpha/beta fold family protein
low similarity to BioH [Kurthia sp. 538-KA26]
GI:13366133, 2-hydroxy-6-ketonona-2,4-dienedioic acid
hydrolase [Escherichia coli] GI:1702883; contains Pfam
profile PF00561: hydrolase, alpha/beta fold family
Length = 331
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +2
Query: 71 SSVNIIKRYVAVATTLFYAL-FHL*SNL-VPVHLNVRHLHVLIYF 199
S V+I++RY+++A TLFY L + L N P+ + + + +YF
Sbjct: 6 SFVHILRRYISIAITLFYNLIWCLFDNFDYPILIKLADTFLSLYF 50
>At1g13450.1 68414.m01572 DNA binding protein GT-1 identical to DNA
binding protein GT-1 GI:598073 from [Arabidopsis
thaliana]
Length = 406
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 561 ESNRVHNALCHHNHSSGHHMDVVVAETAAEDH 466
+S+ HN HH H S +++ E++ EDH
Sbjct: 44 QSHHHHNHHNHHLHQSQPQQQILLGESSGEDH 75
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +3
Query: 219 GDCKIYVGDLGNNASKPELEDAFSYYGPLRNV-----WVARNPPGFAFVEFEDPRDAEDA 383
G+ ++VG+L + E+E S YG ++ + V+ G+ VEF D A
Sbjct: 200 GNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAAC 259
Query: 384 IRGLDGRTICGRRARVEMSN 443
G++G G+ V ++
Sbjct: 260 KEGMNGFIFNGKACVVAFAS 279
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG---FAFVEFEDPRDAEDAIR 389
+YV D+ N ++ +L F G + + + + FAF+EF D A A+R
Sbjct: 139 VYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFTDAEGARSALR 194
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 392
+ +VG L + +L+ FS +G + + + + GF FV F+D + DAI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 393 LDG 401
++G
Sbjct: 67 MNG 69
>At4g38180.1 68417.m05390 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
contains Pfam:PF03101 domain: FAR1 family and PF04434:
SWIM zinc finger
Length = 788
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 321 PPIHFSKDHSKKMHLQVLACWRCFPNRQHRFCSRH 217
PP+ + DH + ++ FP +HRFC H
Sbjct: 358 PPVSITTDHDAVIRAAIM---HVFPGARHRFCKWH 389
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +3
Query: 261 SKPE-LEDAFSYYGPLRNVWVARNPP----GFAFVEFEDPRDAEDAIRGLDGRTICGRRA 425
S PE + F YG + ++ ++ + G F+E P +A A++ L+ GRR
Sbjct: 105 STPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRL 164
Query: 426 RVE 434
+V+
Sbjct: 165 KVD 167
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVA-------RNPPGFAFVEFEDPRDAEDAIR 389
I+V +L NA P+L + F +GP++ + NP F F+ FE + ++
Sbjct: 282 IFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCFGFISFETVASVQSVLQ 341
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 392
K+Y G+L N L + V V N GFAFV + D I
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 393 LDGRTICGRRARVEMSN 443
LDG GR +V ++
Sbjct: 146 LDGTEYLGRALKVNFAD 162
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +3
Query: 231 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDPRDAEDAIRGL 395
I V + + ++ +AF +G ++N+ + + G+A +E+E +A+ AI +
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 396 DGRTICGRRARVE 434
+G + + V+
Sbjct: 157 NGAELLTQNVSVD 169
>At5g33200.1 68418.m03919 hypothetical protein predicted replication
A1 proteins - Arabidopsis thaliana
Length = 426
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 336 GFAFVEFEDPRDAEDAIRGLDGRT 407
G +F E EDP D D +R L G+T
Sbjct: 294 GGSFNETEDPNDVPDGLRNLVGKT 317
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNV-WVARNP--PGFAFVEFEDPRDAEDAIRGLD 398
KI++G S L + S +GPL+ +V+ N AF+E+ D A GL+
Sbjct: 41 KIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAFLEYTDGSVTLKACAGLN 100
Query: 399 GRTICG 416
G + G
Sbjct: 101 GMRLGG 106
>At2g06904.1 68415.m00778 hypothetical protein
Length = 217
Score = 28.3 bits (60), Expect = 4.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
C+ CG+ GHY +DC
Sbjct: 177 CFICGEDGHYPQDC 190
>At5g37510.2 68418.m04518 NADH-ubiquinone dehydrogenase,
mitochondrial, putative similar to NADH-ubiquinone
oxidoreductase 75 kDa subunit, mitochondrial from
Solanum tuberosum [SP|Q43644]
Length = 748
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +3
Query: 261 SKPELED----AFSYYGPLRNVWVARNPPGFAFVEFEDPRDA 374
SKPEL+ A S P + RNP G A V F +P DA
Sbjct: 32 SKPELQSPESAAVSEPEPPTQILPPRNPVGGARVHFSNPEDA 73
>At5g37510.1 68418.m04517 NADH-ubiquinone dehydrogenase,
mitochondrial, putative similar to NADH-ubiquinone
oxidoreductase 75 kDa subunit, mitochondrial from
Solanum tuberosum [SP|Q43644]
Length = 745
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +3
Query: 261 SKPELED----AFSYYGPLRNVWVARNPPGFAFVEFEDPRDA 374
SKPEL+ A S P + RNP G A V F +P DA
Sbjct: 32 SKPELQSPESAAVSEPEPPTQILPPRNPVGGARVHFSNPEDA 73
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
C++CGD H AR+C
Sbjct: 88 CFNCGDMNHLARNC 101
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
C+ CG GH++RDC
Sbjct: 8 CFKCGRPGHWSRDC 21
>At5g53180.1 68418.m06611 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 429
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 240 GDLGNNASKPELEDAFSYYGPLRNVWVARNPPGF-AFVEFEDPRDAEDAIRGLDGRTI 410
GD S L FS +G + + G+ A V+F D A A LDGR+I
Sbjct: 119 GDDARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSI 176
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 27.5 bits (58), Expect = 7.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
C+ CG+ GHY DC
Sbjct: 161 CWICGEDGHYKNDC 174
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNV-----WVARNPPGFAFVEFEDPRDAEDAIR 389
KI+V LG + L DAF YG + + V+ G+ F+ F+ A +A++
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 27.5 bits (58), Expect = 7.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
C+ CG GH+A DC
Sbjct: 265 CFVCGQTGHFASDC 278
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 27.1 bits (57), Expect = 9.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
CY+CG++GH + C
Sbjct: 397 CYECGEKGHLSTAC 410
Score = 27.1 bits (57), Expect = 9.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
CY+CG++GH + C
Sbjct: 481 CYECGEKGHLSTAC 494
Score = 27.1 bits (57), Expect = 9.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +3
Query: 516 CYDCGDRGHYARDC 557
CY+CG++GH + C
Sbjct: 576 CYECGEKGHLSSAC 589
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 228 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 392
++Y+G + +A++ +L+ G + V + R G+AFV F A +AI
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 393 LDGRTICGRRAR 428
L+ G+R +
Sbjct: 153 LNNTDFRGKRIK 164
>At3g01150.1 68416.m00019 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Sus scrofa} SP|Q29099, {Mus musculus}
SP|P17225; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 285 FSYYGPLRNVWVARNPPGF-AFVEFEDPRDAEDAIRGLDGRTI 410
FS +G + + GF A V+F D A A LDGR+I
Sbjct: 133 FSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSI 175
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,035,338
Number of Sequences: 28952
Number of extensions: 238834
Number of successful extensions: 958
Number of sequences better than 10.0: 195
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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