Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H06
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    27   1.6  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   4.8  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   6.4  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    25   6.4  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    25   8.4  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    25   8.4  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   8.4  

>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 305 VNGHGATLTNTHIPG-FGDKLTAAGKVNLFHNDYHDLSAQAFATKNMPSIPQ 457
           VN H +  ++  I G     +T A +V   +N  +DL AQA   KN+ + P+
Sbjct: 440 VNDHSSFPSDLPIKGEMSTNMTGAPRVGSRNNSSNDLHAQAGMLKNVGNGPR 491


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +2

Query: 170 DGTSGAIVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTNTHIPG 349
           D +SGA++ V  T     +    GS+  T+ +     T+G   + V     T+T T I G
Sbjct: 792 DTSSGAVIVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSG-TVEVVEPTAGTVTETIISG 850


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -2

Query: 451 NAGHVLSSESLCAEVMVIIVEQVDFASGGQLVTETRDVSVCKSRSVSIDIVVCQSSCSGS 272
           N+GH  +S S+ +  + +      ++S       + DVSV  S   S DIV      S +
Sbjct: 139 NSGHASASTSIPSTAITVTANSTIYSSATSSFPYSTDVSV--STGTSTDIVTLPPPASST 196


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 478 TVLEIGNLRNAG-HVLSSESLCAEVMVIIVEQVDFASGGQLVTETRDVSV 332
           T L+IG    A  H L+SE   +E ++ I + VD+++   L  +  D SV
Sbjct: 466 TALKIGMALEAHTHALTSEDADSEPVLFITKWVDYSNKYGLGYQLSDESV 515


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 284 AGLAYDNVNGHGATLTNTHIPG 349
           A  A DN+   GA+L + H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +3

Query: 60  TCSLKSLATTSNSMMISRSSGATPGCAGKRVLSLSTLTVPQ 182
           +C+L  L +T  ++ +S+ +     C  K + S +  T+P+
Sbjct: 78  SCTLLQLLSTLENLQLSQVNRIKSRCGSKVLKSTTKFTIPK 118


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 967

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 251  LTNQMKLGAATAGLAYDNVNGHGATLTNTHIPGFGDKL 364
            +T+  +  A    LA  N+ G  + + +TH+PG G  +
Sbjct: 922  ITDLKQYCATEMNLANRNMGGRLSQIISTHLPGDGQSV 959


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,481
Number of Sequences: 5004
Number of extensions: 40746
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)