Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H06
         (500 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.10 
SB_21918| Best HMM Match : STT3 (HMM E-Value=0)                        31   0.71 
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)          29   2.2  
SB_54151| Best HMM Match : PAN (HMM E-Value=0.00084)                   29   2.8  
SB_32794| Best HMM Match : Gam (HMM E-Value=5.8)                       29   2.8  
SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)                   28   3.8  
SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)             28   5.0  
SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)                27   6.6  
SB_31261| Best HMM Match : MMR_HSR1 (HMM E-Value=1.5)                  27   6.6  
SB_5763| Best HMM Match : Cadherin (HMM E-Value=0)                     27   6.6  
SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)                    27   8.7  
SB_40007| Best HMM Match : Arm (HMM E-Value=0.84)                      27   8.7  
SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)                 27   8.7  

>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
 Frame = +2

Query: 101 DDQPEQWGNSRVRRQAGALTINSDGTSGAIVKVPITGNENHKLSALGSVDLTNQMKLGAA 280
           D++P       V+ +    TIN    +   +K  + GN +  L A  S    N  K G  
Sbjct: 651 DNEPVTETIDSVKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDK 707

Query: 281 TAGLAY-DNVNGHGATLTNTH-IPGFGDKLTAAGKVN 385
              ++Y DN+N   A  T+   IPG   K  +  KVN
Sbjct: 708 DVVISYSDNMNNSKAANTDQFGIPGSDSKTGSDSKVN 744



 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 149  PLAGAPWSCPTAPADHHTVRCSSQALQRART 57
            P  G  WSC TA  +H  VR  + + +R RT
Sbjct: 1363 PAQGNAWSCGTAGRNHVRVRDGTMSGKRTRT 1393


>SB_21918| Best HMM Match : STT3 (HMM E-Value=0)
          Length = 520

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 353 GDKLTAAGKVNLFHNDYHDLSAQAFATKNMPSIPQVPDFQHCWW 484
           G  LTA GK++ +   ++ L   ++A  N+P I  V + Q   W
Sbjct: 272 GGVLTATGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTW 315


>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
          Length = 685

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 261 WLVRSTEPRALSLWFSLPVIGTLTIAPEVPSELIV 157
           W+V ++EP  LS    + +I T +I P  P   I+
Sbjct: 472 WVVETSEPLQLSTTIMISIITTTSILPSFPPTAII 506


>SB_54151| Best HMM Match : PAN (HMM E-Value=0.00084)
          Length = 326

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -2

Query: 301 VVCQSSCSGSQLHLVSEINGAKSTELVVFVASYRYLDYST*GTVRVDSESTR 146
           V C    +G    LV+     K + +  F A YRY+     GTV V S + +
Sbjct: 142 VYCDMKTNGGGWTLVTRNEPLKRSLVTTFYADYRYISTEKLGTVLVTSPAVQ 193


>SB_32794| Best HMM Match : Gam (HMM E-Value=5.8)
          Length = 511

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 395 NDYHDLSAQAFATKNMPSIPQVPDFQHCWWR 487
           N Y+D+S Q  A+ ++PS+P + +F+  W R
Sbjct: 116 NAYYDMS-QDIASSSLPSVPDMWEFRAGWCR 145


>SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)
          Length = 808

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 347 GFGDKLTAAGKVNLFHNDYHDLSAQAFAT 433
           G  D LT  G VN+FHN   DL++Q+ +T
Sbjct: 612 GLSD-LTIDGHVNIFHNQGTDLNSQSGST 639


>SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)
          Length = 646

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +2

Query: 212 NENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTNTHIPGFGDKLTAAGKVNLF 391
           N  H +   G ++    +  G  T  L+  + +G+G +LT++    FG K+ +  K+ + 
Sbjct: 429 NRTHPVKYYGPINYRTDVTSG--TTHLSVVDADGNGVSLTSSINKYFGSKIRSK-KLGII 485

Query: 392 HND 400
           +ND
Sbjct: 486 YND 488


>SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
          Length = 245

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 15  SYSSCLFSWSASTAGTCSLKSLATTSNSMMISRS 116
           +Y+S   + SA+T G CS+ S   TSNS   S S
Sbjct: 47  TYTSDSSTTSATTIGVCSIISCTYTSNSATSSGS 80


>SB_31261| Best HMM Match : MMR_HSR1 (HMM E-Value=1.5)
          Length = 188

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 5   DVTKLFLVSVLLVGVNSRYVLVEEPGYYIEQYDDQPEQWGNSRVRRQA 148
           D+T LFL   L  G  SR  L+   G+Y   + D   Q G   + +QA
Sbjct: 111 DITTLFLSQNLFPGGKSRTALIN--GHYFVLFKDPRNQLGVRMLAQQA 156


>SB_5763| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 674

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 3/150 (2%)
 Frame = +2

Query: 8   VTKLFLVSVLLVGVNSRYVLVEEPGYYIEQYDDQPEQWGNSRVRRQAGALTINSDGTSGA 187
           V+ L  V V +  VN    +   PGY IE +++ PE  G S ++ +A    I++D    A
Sbjct: 211 VSDLLKVVVQVEDVNDNPPVFSMPGYTIEYWEESPE--GTSILQVKA----IDADIGDNA 264

Query: 188 IVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTNTHIPGFGDKLT 367
            V   I  N    ++      +T  + LG++      +         T++ +P      +
Sbjct: 265 AVLYSIVENVTDYVTVNA---ITGVISLGSSQLDREVEEYFNFTIRATDSGVPSKSSTAS 321

Query: 368 AAGK-VNLFHND--YHDLSAQAFATKNMPS 448
            A K V++  N   +++    A+  +N P+
Sbjct: 322 VAIKLVDINDNSPVFNNTDYYAYVRENQPA 351


>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
          Length = 601

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -2

Query: 364 QLVTETRDVSV-CKSRSVSIDIVVCQSSCSGSQLHLVSEI 248
           Q   ET   S  CK+ S+S+   VC    S S   +V E+
Sbjct: 494 QNAAETEKFSTYCKANSLSVQTTVCDMKTSKSAAEIVKEL 533


>SB_40007| Best HMM Match : Arm (HMM E-Value=0.84)
          Length = 274

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 421 LCAEVMVIIVEQVDFASGGQLVTETRDVSVCKSRSVSI 308
           + AE    +VE +  ASG ++V   RD+SV  S S +I
Sbjct: 1   MAAEKCKELVENISNASGDEIVAFLRDLSVLISSSPNI 38


>SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
          Length = 1336

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
 Frame = +2

Query: 53   SRYVLVEEPGYYIEQYDDQPEQWGNSRVRRQAGALTINSDGTSGAIVKVPITGNENHKLS 232
            +R   + EP   ++  +DQ E   +S +R +AG     +D   G + +   T N NH   
Sbjct: 1183 ARKAQINEPPSPLKVQEDQRETEAHSPIRTRAGREATCNDHLKGCVNQA--TCN-NHLKG 1239

Query: 233  ALGSVDLTNQMKLGAATAGLAYDNVNGHGATLT-NTHIPGFGDKLT 367
             +      + +K G        D++ G     T N H+ G  ++ T
Sbjct: 1240 CVNQATCNDHLK-GCVNQATCNDHLKGCVNQATCNDHLKGCVNQAT 1284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,485,657
Number of Sequences: 59808
Number of extensions: 333325
Number of successful extensions: 958
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)