Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H06
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    31   0.62 
AC024785-4|AAF60602.3|  466|Caenorhabditis elegans C-type lectin...    29   2.5  
AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical ...    28   4.4  
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AF016425-6|AAY86242.1|  104|Caenorhabditis elegans Hypothetical ...    27   7.6  

>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +2

Query: 158  TINSDGTSGAIVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTNT 337
            T+ + G++G+ V  P T +     S+  S+  +     G++T+G       G  +T TN+
Sbjct: 1548 TVPNTGSTGSTVTNPSTSSSTSGSSSTQSIPSSTAANTGSSTSGPTVATTQGSSSTQTNS 1607

Query: 338  H 340
            +
Sbjct: 1608 N 1608


>AC024785-4|AAF60602.3|  466|Caenorhabditis elegans C-type lectin
           protein 72 protein.
          Length = 466

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
 Frame = +2

Query: 323 TLTNTHIP----GFGDKLTAAGKVNLFHNDYHDLSA 418
           T  ++H+P    GFGD  T +  +++ +N Y+D+S+
Sbjct: 230 TYVSSHLPDSTLGFGDSTTGSNVLDVINNFYNDISS 265


>AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical
           protein Y71G10AR.4 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -3

Query: 264 IWLVRSTEPRALSLWFSLPVIGTLTIA 184
           +W+VRS E R L+++F + V+  +++A
Sbjct: 169 VWVVRSKESRRLTVYFVISVVVLISMA 195


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical protein
            F36H2.3 protein.
          Length = 1388

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 21/74 (28%), Positives = 27/74 (36%)
 Frame = +3

Query: 6    MSPSYSSCLFSWSASTAGTCSLKSLATTSNSMMISRSSGATPGCAGKRVLSLSTLTVPQV 185
            M P  S    + S +  G  +  S AT SN M      G      G      S LT+P  
Sbjct: 1004 MGPFPSGTTVTGSCTNGGAITGASTATCSNGMWNPTFLGTCSLIGGSTTGQCSALTIPSG 1063

Query: 186  L*SRYL*LATKTTS 227
              + Y   +  TTS
Sbjct: 1064 AQATYSPFSLSTTS 1077


>Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical
           protein M79.1b protein.
          Length = 1214

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 343 DVSVCKSRSVSIDIVVCQSSCSGSQLHLVSEINGAKSTELVVFVASYRY 197
           D S  +      D+V C S  S + +H ++ ++ + S+   +FVA Y +
Sbjct: 68  DSSTFRGSQSREDLVACSSMNSVNNVHDMNTVSSSSSSSAPLFVALYDF 116


>Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical
           protein M79.1a protein.
          Length = 1224

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 343 DVSVCKSRSVSIDIVVCQSSCSGSQLHLVSEINGAKSTELVVFVASYRY 197
           D S  +      D+V C S  S + +H ++ ++ + S+   +FVA Y +
Sbjct: 78  DSSTFRGSQSREDLVACSSMNSVNNVHDMNTVSSSSSSSAPLFVALYDF 126


>Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical
           protein M79.1c protein.
          Length = 1209

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 307 DIVVCQSSCSGSQLHLVSEINGAKSTELVVFVASYRY 197
           D+V C S  S + +H ++ ++ + S+   +FVA Y +
Sbjct: 75  DLVACSSMNSVNNVHDMNTVSSSSSSSAPLFVALYDF 111


>Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical
           protein ZK666.7 protein.
          Length = 403

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 251 LTNQMKLGAATAGLAY--DNVNGHGATLTNTHIPGF 352
           L  +MK+  A A +AY  DNVNG    L+    PG+
Sbjct: 180 LATRMKVDVAIATVAYGQDNVNGFLRQLSQIATPGY 215


>AF016425-6|AAY86242.1|  104|Caenorhabditis elegans Hypothetical
           protein F59A7.11 protein.
          Length = 104

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 23  LVSVLLVGVNSRYVLVEEPGYYIEQYDDQPEQWGNSRVRRQAGALTINSDGTS 181
           L++ LL  +    V+   PG   +  +D  +     R RR  G  T+ +DG++
Sbjct: 4   LINSLLFTIAILAVVWGYPGQQADHVEDLTKNRNEPRARRDLGTETVRADGSA 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,902,758
Number of Sequences: 27780
Number of extensions: 242629
Number of successful extensions: 776
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)