Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_H06
(500 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl... 34 0.062
At5g43990.2 68418.m05382 SET domain-containing protein identical... 31 0.44
At5g43990.1 68418.m05383 SET domain-containing protein identical... 31 0.44
At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family pr... 29 1.3
At5g51180.2 68418.m06346 expressed protein 29 1.8
At5g51180.1 68418.m06345 expressed protein 29 1.8
At5g16910.1 68418.m01982 cellulose synthase family protein simil... 28 3.1
At3g54280.1 68416.m05999 SNF2 domain-containing protein / helica... 28 3.1
At3g57030.1 68416.m06348 strictosidine synthase family protein s... 28 4.1
At4g21270.1 68417.m03074 kinesin-like protein A (KATA) 27 5.4
At5g64360.3 68418.m08085 DNAJ heat shock N-terminal domain-conta... 27 7.1
At5g64360.2 68418.m08084 DNAJ heat shock N-terminal domain-conta... 27 7.1
At5g64360.1 68418.m08083 DNAJ heat shock N-terminal domain-conta... 27 7.1
At5g52140.1 68418.m06472 zinc finger protein-related 27 7.1
At2g20810.1 68415.m02448 glycosyl transferase family 8 protein c... 27 7.1
At5g40480.1 68418.m04909 expressed protein ; expression supporte... 27 9.4
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 27 9.4
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 27 9.4
At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family pr... 27 9.4
>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
identical to ubiquitin-protein ligase 1 [Arabidopsis
thaliana] GI:7108521; E3, HECT-domain protein family;
similar to GI:7108521, GB:AAF36454 from [Arabidopsis
thaliana]
Length = 3891
Score = 33.9 bits (74), Expect = 0.062
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +3
Query: 45 ASTAGTCSLKSLATTSNSMMISRSSGATPGCAGKRVLS-LSTLTVP 179
AS+ + +++ LAT S+ +SRS+G+ G + RVL LS+LT P
Sbjct: 3290 ASSLSSSTVRELATLSSKQKMSRSTGSMAGASILRVLQVLSSLTSP 3335
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 31.1 bits (67), Expect = 0.44
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 125 NSRVRRQAGALTINSDGTSGAIVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDN 304
N V +AG +DGT+ I + +HKL+A +++ ++L ++ +G N
Sbjct: 220 NGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA--TIEEPPALELASSASGEVKIN 277
Query: 305 VNGHGAT-LTNTHIP 346
++ AT +N H+P
Sbjct: 278 LSFAPATGGSNPHLP 292
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 31.1 bits (67), Expect = 0.44
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 125 NSRVRRQAGALTINSDGTSGAIVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDN 304
N V +AG +DGT+ I + +HKL+A +++ ++L ++ +G N
Sbjct: 197 NGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA--TIEEPPALELASSASGEVKIN 254
Query: 305 VNGHGAT-LTNTHIP 346
++ AT +N H+P
Sbjct: 255 LSFAPATGGSNPHLP 269
>At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 760
Score = 29.5 bits (63), Expect = 1.3
Identities = 22/58 (37%), Positives = 27/58 (46%)
Frame = -2
Query: 472 LEIGNLRNAGHVLSSESLCAEVMVIIVEQVDFASGGQLVTETRDVSVCKSRSVSIDIV 299
LE GN + S SLC E +E + S GQ T +R SVC S S+D V
Sbjct: 358 LETGNGFEKLKINVSASLCGESQSKDLEIFELLSPGQSYTHSRSESVCSVVS-SVDYV 414
>At5g51180.2 68418.m06346 expressed protein
Length = 357
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = -2
Query: 334 VCKSRSV--SIDIVVCQSSCSGSQLHLVSEING 242
+CK+ SV S+D+ CQ+S S S HLV ++G
Sbjct: 10 LCKAESVDGSLDVWSCQNSDSSSADHLVVMVHG 42
>At5g51180.1 68418.m06345 expressed protein
Length = 357
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = -2
Query: 334 VCKSRSV--SIDIVVCQSSCSGSQLHLVSEING 242
+CK+ SV S+D+ CQ+S S S HLV ++G
Sbjct: 10 LCKAESVDGSLDVWSCQNSDSSSADHLVVMVHG 42
>At5g16910.1 68418.m01982 cellulose synthase family protein similar
to gi:2827143 cellulose synthase catalytic subunit,
Arabidopsis thaliana, gi:9622886 cellulose synthase-7
from Zea mays
Length = 1145
Score = 28.3 bits (60), Expect = 3.1
Identities = 23/78 (29%), Positives = 38/78 (48%)
Frame = -3
Query: 444 GMFLVAKACALRSW*SLWNRLTLPAAVSLSPKPGM*VFVRVAPCPLTLSYANPAVAAPNF 265
GM + A+ R W L +L +PA V +SP + +F+R+ L L++ P+
Sbjct: 266 GMGMEAQDLMSRPWRPLTRKLKIPAGV-ISPY-RLLIFIRIVVLALFLTW-RVKHQNPDA 322
Query: 264 IWLVRSTEPRALSLWFSL 211
+WL + LWF+L
Sbjct: 323 VWLWGMSV--VCELWFAL 338
>At3g54280.1 68416.m05999 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|O14981
TBP-associated factor 172 (TAF-172) (TAF(II)170) {Homo
sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 2049
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 326 LTNTHIPGFGDKLTAAGKVNLFHNDYHDLSAQAFATKNMPSIPQVPDFQH 475
L TH+ G G LT+A + +D++ + FA + + Q D H
Sbjct: 1882 LLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQFANIELNKLWQAMDRAH 1931
>At3g57030.1 68416.m06348 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]
Length = 374
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 303 LSYANPAVAAPN--FIWLVRSTEPRALSLWFSLPVIGTLTIAPEVP 172
L++AN + + F+ +V +T + L LW S P GT + E+P
Sbjct: 218 LAFANGVALSKDRSFVLVVETTTCKILRLWLSGPNAGTHQVFAELP 263
>At4g21270.1 68417.m03074 kinesin-like protein A (KATA)
Length = 793
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -2
Query: 364 QLVTETRDVSVCKSRSVSIDIVVCQSSCSGSQLHLVSEING-AKSTELVVF 215
++ ET + +R+ S+D+V S SG Q + ++NG ++L +F
Sbjct: 568 EIYNETIRDLLSTNRTTSMDLVRADSGTSGKQYTITHDVNGHTHVSDLTIF 618
>At5g64360.3 68418.m08085 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226 DnaJ domain
Length = 464
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -3
Query: 249 STEPRALSLWFSLPVIGTLTIAPEVPSELIVRAPACRRTLE 127
S +P A S W + P L P+ E ++ CRR +
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQ 227
>At5g64360.2 68418.m08084 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226 DnaJ domain
Length = 464
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -3
Query: 249 STEPRALSLWFSLPVIGTLTIAPEVPSELIVRAPACRRTLE 127
S +P A S W + P L P+ E ++ CRR +
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQ 227
>At5g64360.1 68418.m08083 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226 DnaJ domain
Length = 422
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -3
Query: 249 STEPRALSLWFSLPVIGTLTIAPEVPSELIVRAPACRRTLE 127
S +P A S W + P L P+ E ++ CRR +
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQ 227
>At5g52140.1 68418.m06472 zinc finger protein-related
Length = 277
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = -2
Query: 382 DFASGGQLVTETRDVSVCKSRSVSIDIVVCQSSCSGSQLH 263
D+A G ++ + ++ S+C +++++I + +C S LH
Sbjct: 29 DYAIGREIQQQYQNKSICNDAAIALEIQKEEEACVHSCLH 68
>At2g20810.1 68415.m02448 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 536
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 307 DIVVCQSSCSGSQLHLVSEINGAKSTELVVFVASYRYLDYS 185
D+VV + S + L +NGA T + F ++YL+YS
Sbjct: 365 DVVVQKDLSSLFSIDLNKNVNGAVETCMETFHRYHKYLNYS 405
>At5g40480.1 68418.m04909 expressed protein ; expression supported by
MPSS
Length = 1919
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 305 VNGHGATLTNTHIPGFGDKLTAAGKVNLF 391
V+ G TLTN H+P G K + N F
Sbjct: 1610 VDSPGETLTNVHVPAEGYKFPVKFRENKF 1638
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -3
Query: 195 LTIAPEV-PSELIVRAPACRRTLELPHC 115
+ IA +V P EL+V PA R +E+P+C
Sbjct: 145 VVIAHDVDPIELVVWLPALCRKMEVPYC 172
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -3
Query: 195 LTIAPEV-PSELIVRAPACRRTLELPHC 115
+ IA +V P EL+V PA R +E+P+C
Sbjct: 146 VVIAHDVDPIELVVWLPALCRKMEVPYC 173
>At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 253
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 478 TVLEIGNLRNAGHVLSSESLCAE 410
+VL G+ N GH++ SLC E
Sbjct: 138 SVLHFGDYSNDGHIIFKASLCCE 160
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,302,282
Number of Sequences: 28952
Number of extensions: 225882
Number of successful extensions: 623
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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