Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H05
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    27   2.0  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    25   4.7  

>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 195 PLAEPLTEPLVEPLTEPLVEHLAEP 269
           P+ E  T P+VE +  P+VE +  P
Sbjct: 209 PMEETTTTPMVETMITPMVEAMTTP 233


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +1

Query: 295 MCELRRPHEIKWWLLVIKIMVVGPGLQSQSDAGRAASNSGQ 417
           +C        K WLLV+K++  GP +   +   R    S +
Sbjct: 434 LCNKHEKKIFKLWLLVLKVIREGPQVHQSNVLPRVIQQSSE 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,206,293
Number of Sequences: 5004
Number of extensions: 18431
Number of successful extensions: 42
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)