Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_H05
(493 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0035 - 7592177-7592938 33 0.16
02_03_0235 - 16702768-16702956,16703956-16704492,16705084-167052... 25 1.4
05_03_0033 - 7585267-7586028 29 2.7
08_01_0620 - 5416197-5416225,5416333-5416652,5417144-5417235,541... 28 3.5
03_06_0711 - 35682293-35682952 28 4.7
08_02_1459 - 27289319-27290440 27 8.2
07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451 27 8.2
>05_03_0035 - 7592177-7592938
Length = 253
Score = 32.7 bits (71), Expect = 0.16
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 189 AEPLAEPLTEPLVEPLTEPLVEHLAEP--GPSYD 284
+EP AEP +EP EP +EP E AEP P Y+
Sbjct: 141 SEPYAEPKSEPKSEPQSEPNPETKAEPKSEPKYE 174
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 189 AEPLAEPL--TEPLVEPLTEPLVEHLAEPGP 275
+EP +EP +EP EP +EP E +EP P
Sbjct: 131 SEPKSEPKPKSEPYAEPKSEPKSEPQSEPNP 161
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 186 FAEPLAEPLTEPLVEPLTEPLVEHLAEP 269
+AEP +EP +EP EP E E +EP
Sbjct: 144 YAEPKSEPKSEPQSEPNPETKAEPKSEP 171
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 189 AEPLAEPLTEPLVEPLTEPLVEHLAEPGP 275
+EP +EP E EP +EP E +EP P
Sbjct: 153 SEPQSEPNPETKAEPKSEPKYEPKSEPTP 181
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +3
Query: 195 PLAEPLTEPLVEPLTEPLVEHLAEPGP 275
P EP E EP TEP E AEP P
Sbjct: 181 PQTEPRAESQPEPKTEPKSESKAEPKP 207
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +3
Query: 189 AEPLAEPLTEPLVEPL--TEPLVEHLAEP 269
AEP +EP EP EP TEP E EP
Sbjct: 165 AEPKSEPKYEPKSEPTPQTEPRAESQPEP 193
>02_03_0235 -
16702768-16702956,16703956-16704492,16705084-16705233,
16705310-16705625,16707005-16707286,16707895-16707971,
16708121-16708186,16708700-16709246,16709435-16709565,
16709642-16709746,16709859-16710039,16710123-16710185,
16711000-16711109,16711576-16711638,16711859-16712191
Length = 1049
Score = 25.0 bits (52), Expect(2) = 1.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 15 AWAIPRPPHCPFFGGNARALLEFRRSRGCGLRFKRRFLELSE 140
+W+ P PP P + G+ R +R R F+RR +L E
Sbjct: 46 SWSWPPPPRAPAWPGDRRR----QRERAFREEFERRRRQLRE 83
Score = 23.0 bits (47), Expect(2) = 1.4
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 6 RMRAWAIPRPP 38
R+ AWA PRPP
Sbjct: 19 RLPAWARPRPP 29
>05_03_0033 - 7585267-7586028
Length = 253
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 186 FAEPLAEPLTEPLVEPLTEPLVEHLAEP 269
+AEP +EP +EP EP E E +EP
Sbjct: 144 YAEPKSEPKSEPQSEPNPETKAEPKSEP 171
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +3
Query: 195 PLAEPLTEPLVEPLTEPLVEHLAEPGP 275
P EP E EP TEP E AEP P
Sbjct: 181 PQTEPKAESQPEPKTEPKSESKAEPKP 207
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 189 AEPLAEPLTEPLVEPLTEPLVEHLAEP 269
+E AEP +EP EP +EP E AEP
Sbjct: 141 SELYAEPKSEPKSEPQSEPNPETKAEP 167
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 189 AEPLAEPLTEPLVEPLTEPLVEHLAEPGP 275
+EP +EP E EP +EP E +EP P
Sbjct: 153 SEPQSEPNPETKAEPKSEPKSEPKSEPTP 181
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +3
Query: 189 AEPLAEPLTEPLVEPL--TEPLVEHLAEP 269
AEP +EP +EP EP TEP E EP
Sbjct: 165 AEPKSEPKSEPKSEPTPQTEPKAESQPEP 193
>08_01_0620 -
5416197-5416225,5416333-5416652,5417144-5417235,
5417304-5417394,5417489-5417577,5417812-5417929,
5418007-5418098,5418180-5418215,5418323-5418403,
5418510-5418617,5418809-5418901,5419045-5419146,
5419345-5419449,5419526-5419612,5419952-5420227
Length = 572
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 275 GSRFGEVFDERFGERFDERFGERFG 201
G R G+ F R G+RF R G RFG
Sbjct: 504 GGRSGDRFGGRSGDRFGGRSGGRFG 528
>03_06_0711 - 35682293-35682952
Length = 219
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +3
Query: 195 PLAEPLTEPLVEPLTEPLVEHLAEPGPS 278
P A P T PL P P V H A P PS
Sbjct: 73 PPAPPETSPLPAPSHSPPVPHSAAPEPS 100
>08_02_1459 - 27289319-27290440
Length = 373
Score = 27.1 bits (57), Expect = 8.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 3 VRMRAWAIPRPPHCPFFGGNA 65
+ M +W +P+P FFGG A
Sbjct: 46 IPMNSWLVPKPEPVEFFGGMA 66
>07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451
Length = 511
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 97 PRERRNSRSARALPPKKGQCGGRG 26
PRE R +RS +PP G GRG
Sbjct: 30 PREPRRARSRSHVPPPPGAGDGRG 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,802,219
Number of Sequences: 37544
Number of extensions: 151636
Number of successful extensions: 503
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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